Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   V3C22_RS09275 Genome accession   NZ_CP183775
Coordinates   1880891..1882159 (+) Length   422 a.a.
NCBI ID   WP_226706722.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1875891..1887159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS09240 (V3C22_09240) - 1876978..1877172 (+) 195 WP_002280530.1 hypothetical protein -
  V3C22_RS09245 (V3C22_09245) - 1877200..1877496 (-) 297 WP_002280529.1 LacI family DNA-binding transcriptional regulator -
  V3C22_RS09250 (V3C22_09250) - 1877558..1878301 (-) 744 WP_002262360.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  V3C22_RS09255 (V3C22_09255) prmA 1878302..1879255 (-) 954 WP_086616420.1 50S ribosomal protein L11 methyltransferase -
  V3C22_RS09260 (V3C22_09260) - 1879483..1879779 (-) 297 WP_086616422.1 LlsX family protein -
  V3C22_RS09265 (V3C22_09265) - 1879792..1880262 (-) 471 WP_086616423.1 DUF3013 family protein -
  V3C22_RS09270 (V3C22_09270) - 1880410..1880901 (+) 492 WP_002272501.1 GNAT family N-acetyltransferase -
  V3C22_RS09275 (V3C22_09275) rarA 1880891..1882159 (+) 1269 WP_226706722.1 AAA family ATPase Machinery gene
  V3C22_RS09290 (V3C22_09290) - 1882563..1884479 (-) 1917 WP_226706721.1 heavy metal translocating P-type ATPase -
  V3C22_RS09295 (V3C22_09295) - 1884578..1885372 (+) 795 WP_002268475.1 MerR family transcriptional regulator -
  V3C22_RS09300 (V3C22_09300) - 1885541..1886566 (-) 1026 WP_002262368.1 YeiH family protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46544.81 Da        Isoelectric Point: 6.1906

>NTDB_id=983317 V3C22_RS09275 WP_226706722.1 1880891..1882159(+) (rarA) [Streptococcus mutans strain Xc]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEANFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
AALTDTERGFDFEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTIIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSDTIPIPRHLRDGHYASSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGANYFTA
NETGKYERALGANKSKIDQLSQ

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=983317 V3C22_RS09275 WP_226706722.1 1880891..1882159(+) (rarA) [Streptococcus mutans strain Xc]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGCCCTCCGGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTA
CAGGAAATTGCTGAAGAAGCTAACTTTTCAGGTGGTTTGGTCTTGCTCCTAGATGAAATTCATCGTCTAGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGTGTTCAGATTTTTGAGTTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GCAGCTCTAACAGATACAGAGCGCGGCTTTGATTTTGAAGTCAAACTAGATGATGATGCTCTTGACTTCATTGCGCAAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCCATCATGTCCACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGGCCACTAT
GATGTCTTATCCGCCTTACAAAAATCTATTCGCGGTTCAGATGTCAATGCCAGCCTTCACTATGCTGCCAGATTAATCGA
AGCTGGTGATCTGCCAAGTCTAGCTAGACGTTTAACCATTATTGCTTACGAAGATATCGGCTTAGCCAATCCTGATGCAC
AGATTCATACAGTAACAGCGCTGGAAGCAGCCCAAAAAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTTGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAGAGCGA
CACGATCCCTATTCCTCGCCACTTACGTGATGGTCATTACGCTAGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTAACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCATTAGGAGCTAATAAGAGTAAGATTGACCAGCTCTCCCAATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.214

96.445

0.571