Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSU11_RS07940 Genome accession   NZ_CP151981
Coordinates   1592035..1592814 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FSL R5-0712     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587035..1597814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU11_RS07920 (NSU11_07920) trmFO 1587739..1589043 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSU11_RS07925 (NSU11_07925) xerC 1589106..1590023 (+) 918 WP_024424182.1 tyrosine recombinase XerC -
  NSU11_RS07930 (NSU11_07930) hslV 1590038..1590583 (+) 546 WP_024424181.1 ATP-dependent protease subunit HslV -
  NSU11_RS07935 (NSU11_07935) hslU 1590600..1592000 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  NSU11_RS07940 (NSU11_07940) codY 1592035..1592814 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSU11_RS07945 (NSU11_07945) flgB 1593103..1593492 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  NSU11_RS07950 (NSU11_07950) flgC 1593492..1593944 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  NSU11_RS07955 (NSU11_07955) fliE 1593956..1594273 (+) 318 WP_024424178.1 flagellar hook-basal body complex protein FliE -
  NSU11_RS07960 (NSU11_07960) fliF 1594323..1595915 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  NSU11_RS07965 (NSU11_07965) fliG 1595927..1596943 (+) 1017 WP_024424176.1 flagellar motor switch protein FliG -
  NSU11_RS07970 (NSU11_07970) fliH 1596936..1597700 (+) 765 WP_024424175.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=983245 NSU11_RS07940 WP_007499612.1 1592035..1592814(+) (codY) [Bacillus sp. FSL R5-0712]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=983245 NSU11_RS07940 WP_007499612.1 1592035..1592814(+) (codY) [Bacillus sp. FSL R5-0712]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTCAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGAAAGCTTCTTGGCTACTCCATTA
ATCAACAGATCGAAAATGCACGTATGAAAAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTTCCGATTGAAAACCGGGACTTATTCCA
ATCAGGTTTAACAACAATTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGCTCTCTTTCCTACAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATTGCAGACCGTGTAGGGATCACGC
GCTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTGATTGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment