Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   V3C22_RS02315 Genome accession   NZ_CP183775
Coordinates   472755..473237 (-) Length   160 a.a.
NCBI ID   WP_002295536.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 467755..478237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS02290 (V3C22_02290) - 468369..468890 (+) 522 WP_002263051.1 DUF1273 domain-containing protein -
  V3C22_RS02295 (V3C22_02295) gpsB 468996..469334 (+) 339 WP_002263050.1 cell division regulator GpsB -
  V3C22_RS02305 (V3C22_02305) - 469784..470938 (+) 1155 WP_002295529.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  V3C22_RS02310 (V3C22_02310) - 470954..472594 (+) 1641 WP_002295530.1 cell division site-positioning protein MapZ family protein -
  V3C22_RS02315 (V3C22_02315) luxS 472755..473237 (-) 483 WP_002295536.1 S-ribosylhomocysteine lyase Regulator
  V3C22_RS02320 (V3C22_02320) - 473382..474989 (+) 1608 WP_002263046.1 ribonuclease Y -
  V3C22_RS02325 (V3C22_02325) gmk 475424..476056 (+) 633 WP_002295539.1 guanylate kinase -
  V3C22_RS02330 (V3C22_02330) rpoZ 476080..476397 (+) 318 WP_002266355.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17977.60 Da        Isoelectric Point: 6.3763

>NTDB_id=983231 V3C22_RS02315 WP_002295536.1 472755..473237(-) (luxS) [Streptococcus mutans strain Xc]
MKKEVTVESFELDHTAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEIANTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLSLKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=983231 V3C22_RS02315 WP_002295536.1 472755..473237(-) (luxS) [Streptococcus mutans strain Xc]
ATGAAAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGATCACACTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGATGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTGCTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAGCTGAGTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.597

93.125

0.369

Multiple sequence alignment