Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NST24_RS08000 Genome accession   NZ_CP151977
Coordinates   1579177..1579956 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus sp. FSL R5-0286     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574177..1584956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST24_RS07980 (NST24_07980) trmFO 1574881..1576185 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NST24_RS07985 (NST24_07985) xerC 1576248..1577165 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  NST24_RS07990 (NST24_07990) hslV 1577180..1577725 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NST24_RS07995 (NST24_07995) hslU 1577742..1579142 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  NST24_RS08000 (NST24_08000) codY 1579177..1579956 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NST24_RS08005 (NST24_08005) flgB 1580247..1580636 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  NST24_RS08010 (NST24_08010) flgC 1580636..1581088 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  NST24_RS08015 (NST24_08015) fliE 1581100..1581417 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NST24_RS08020 (NST24_08020) fliF 1581468..1583060 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  NST24_RS08025 (NST24_08025) fliG 1583072..1584088 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  NST24_RS08030 (NST24_08030) fliH 1584081..1584845 (+) 765 WP_342462512.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=983026 NST24_RS08000 WP_007499612.1 1579177..1579956(+) (codY) [Bacillus sp. FSL R5-0286]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=983026 NST24_RS08000 WP_007499612.1 1579177..1579956(+) (codY) [Bacillus sp. FSL R5-0286]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment