Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NSQ60_RS07865 Genome accession   NZ_CP151976
Coordinates   1537349..1538251 (+) Length   300 a.a.
NCBI ID   WP_046310923.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0502     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1532349..1543251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ60_RS07845 (NSQ60_07845) - 1533013..1534752 (+) 1740 WP_046310920.1 hypothetical protein -
  NSQ60_RS07850 (NSQ60_07850) - 1534749..1535024 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  NSQ60_RS07855 (NSQ60_07855) sucC 1535200..1536360 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  NSQ60_RS07860 (NSQ60_07860) sucD 1536383..1537285 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NSQ60_RS07865 (NSQ60_07865) dprA 1537349..1538251 (+) 903 WP_046310923.1 DNA-processing protein DprA Machinery gene
  NSQ60_RS07870 (NSQ60_07870) topA 1538445..1540520 (+) 2076 WP_041108973.1 type I DNA topoisomerase -
  NSQ60_RS07875 (NSQ60_07875) trmFO 1540591..1541895 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ60_RS07880 (NSQ60_07880) xerC 1541958..1542875 (+) 918 WP_034281771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34213.61 Da        Isoelectric Point: 8.8727

>NTDB_id=982964 NSQ60_RS07865 WP_046310923.1 1537349..1538251(+) (dprA) [Bacillus sp. FSL W8-0502]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRELQTIDFTRLKKAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHEQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTEPT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=982964 NSQ60_RS07865 WP_046310923.1 1537349..1538251(+) (dprA) [Bacillus sp. FSL W8-0502]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGAGTTACAAACGATCGACTTTACCC
GCTTAAAAAAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATTGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATTTATACCCAAAAGAGCATGA
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCACCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCACTGACGAAAGGAACCATCGTGATACAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCGGTTGCTGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCAACAAAAGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACCAACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.208

96

0.53

Multiple sequence alignment