Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSQ17_RS08065 Genome accession   NZ_CP151975
Coordinates   1579457..1580236 (+) Length   259 a.a.
NCBI ID   WP_058337353.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0629     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1574457..1585236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ17_RS08045 (NSQ17_08045) trmFO 1575161..1576465 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ17_RS08050 (NSQ17_08050) xerC 1576528..1577445 (+) 918 WP_039166693.1 tyrosine recombinase XerC -
  NSQ17_RS08055 (NSQ17_08055) hslV 1577460..1578005 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NSQ17_RS08060 (NSQ17_08060) hslU 1578022..1579422 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  NSQ17_RS08065 (NSQ17_08065) codY 1579457..1580236 (+) 780 WP_058337353.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSQ17_RS08070 (NSQ17_08070) flgB 1580526..1580915 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  NSQ17_RS08075 (NSQ17_08075) flgC 1580915..1581367 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  NSQ17_RS08080 (NSQ17_08080) fliE 1581379..1581696 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NSQ17_RS08085 (NSQ17_08085) fliF 1581747..1583339 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  NSQ17_RS08090 (NSQ17_08090) fliG 1583351..1584367 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  NSQ17_RS08095 (NSQ17_08095) fliH 1584360..1585124 (+) 765 WP_024720351.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29016.26 Da        Isoelectric Point: 4.6467

>NTDB_id=982905 NSQ17_RS08065 WP_058337353.1 1579457..1580236(+) (codY) [Bacillus sp. FSL W8-0629]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=982905 NSQ17_RS08065 WP_058337353.1 1579457..1580236(+) (codY) [Bacillus sp. FSL W8-0629]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTCAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTATTCGATCA
ACCAACAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATCAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGATCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTAGGGATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCGCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.139

100

0.961
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.425

98.069

0.475

Multiple sequence alignment