Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSS78_RS07860 Genome accession   NZ_CP151974
Coordinates   1584716..1585495 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0920     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579716..1590495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS78_RS07840 (NSS78_07840) trmFO 1580420..1581724 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSS78_RS07845 (NSS78_07845) xerC 1581787..1582704 (+) 918 WP_003211704.1 tyrosine recombinase XerC -
  NSS78_RS07850 (NSS78_07850) hslV 1582719..1583264 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  NSS78_RS07855 (NSS78_07855) hslU 1583281..1584681 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  NSS78_RS07860 (NSS78_07860) codY 1584716..1585495 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSS78_RS07865 (NSS78_07865) flgB 1585782..1586171 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  NSS78_RS07870 (NSS78_07870) flgC 1586171..1586623 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  NSS78_RS07875 (NSS78_07875) fliE 1586635..1586952 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  NSS78_RS07880 (NSS78_07880) fliF 1587002..1588594 (+) 1593 WP_327840672.1 flagellar basal-body MS-ring/collar protein FliF -
  NSS78_RS07885 (NSS78_07885) fliG 1588606..1589622 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  NSS78_RS07890 (NSS78_07890) fliH 1589615..1590379 (+) 765 WP_003212485.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=982843 NSS78_RS07860 WP_003210838.1 1584716..1585495(+) (codY) [Bacillus sp. FSL W8-0920]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=982843 NSS78_RS07860 WP_003210838.1 1584716..1585495(+) (codY) [Bacillus sp. FSL W8-0920]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGGACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment