Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NSQ52_RS07970 Genome accession   NZ_CP151973
Coordinates   1572501..1573280 (+) Length   259 a.a.
NCBI ID   WP_144678823.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-1141     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567501..1578280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ52_RS07950 (NSQ52_07950) trmFO 1568205..1569509 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NSQ52_RS07955 (NSQ52_07955) xerC 1569572..1570489 (+) 918 WP_039166693.1 tyrosine recombinase XerC -
  NSQ52_RS07960 (NSQ52_07960) hslV 1570504..1571049 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  NSQ52_RS07965 (NSQ52_07965) hslU 1571066..1572466 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  NSQ52_RS07970 (NSQ52_07970) codY 1572501..1573280 (+) 780 WP_144678823.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NSQ52_RS07975 (NSQ52_07975) flgB 1573570..1573959 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  NSQ52_RS07980 (NSQ52_07980) flgC 1573959..1574411 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  NSQ52_RS07985 (NSQ52_07985) fliE 1574423..1574740 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  NSQ52_RS07990 (NSQ52_07990) fliF 1574791..1576383 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  NSQ52_RS07995 (NSQ52_07995) fliG 1576395..1577411 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  NSQ52_RS08000 (NSQ52_08000) fliH 1577404..1578168 (+) 765 WP_017367245.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29006.22 Da        Isoelectric Point: 4.6467

>NTDB_id=982783 NSQ52_RS07970 WP_144678823.1 1572501..1573280(+) (codY) [Bacillus sp. FSL W8-1141]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=982783 NSQ52_RS07970 WP_144678823.1 1572501..1573280(+) (codY) [Bacillus sp. FSL W8-1141]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTCAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTTTTAAGCAGAAGAGGGAAACTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGTTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATCAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGATCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAGTCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCAGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAGATTGCAGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTGCGTAAGTTAGAAAGTGCAGGCGTTATTGAATCACGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAATAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.753

100

0.958
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.425

98.069

0.475

Multiple sequence alignment