Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NST70_RS09965 Genome accession   NZ_CP151971
Coordinates   2082382..2084745 (-) Length   787 a.a.
NCBI ID   WP_035188232.1    Uniprot ID   -
Organism   Weizmannia sp. FSL K6-0777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2077382..2089745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST70_RS09940 (NST70_09940) - 2077724..2078374 (-) 651 WP_014097896.1 HlyD family efflux transporter periplasmic adaptor subunit -
  NST70_RS09945 (NST70_09945) - 2078382..2078822 (-) 441 WP_035188223.1 MarR family transcriptional regulator -
  NST70_RS09950 (NST70_09950) dtd 2079005..2079445 (-) 441 WP_035188226.1 D-aminoacyl-tRNA deacylase -
  NST70_RS09955 (NST70_09955) - 2079459..2081648 (-) 2190 WP_341289131.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NST70_RS09960 (NST70_09960) - 2081870..2082391 (-) 522 WP_014097892.1 adenine phosphoribosyltransferase -
  NST70_RS09965 (NST70_09965) recJ 2082382..2084745 (-) 2364 WP_035188232.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NST70_RS09970 (NST70_09970) secDF 2084834..2087098 (-) 2265 WP_035188234.1 protein translocase subunit SecDF -
  NST70_RS09975 (NST70_09975) - 2087244..2087564 (-) 321 WP_017551048.1 post-transcriptional regulator -
  NST70_RS09980 (NST70_09980) spoVB 2087668..2089212 (+) 1545 WP_017551049.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88002.00 Da        Isoelectric Point: 5.6611

>NTDB_id=982711 NST70_RS09965 WP_035188232.1 2082382..2084745(-) (recJ) [Weizmannia sp. FSL K6-0777]
MLQSRTRWRVPEMEPKAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGLAYYDPFLLHDMEKAAARIREAIKKE
EPVLVFGDYDADGVTSTAIMMAALNDLGAHAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVAREL
GITLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEDLAAIGTVADLVPLLDENRLI
AINGIKRLRTTKRAGLVALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHAAPAAELLMTEDTEEAGMLAETIDGLNKE
RQKIVNDMTNEAIELVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDPETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVEELRRRLNEQAAALPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAECPQIRAIGADGKHLKLTLSKNGTTLDGIGFGLGHLAPHISPSACISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWARYVPEEDQAFVVFQKETLRNLPLPDFSVRLVSVATMEEARAFDPSNKNIVFLDLPKGPRM
MAALLEGGSPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKQHGDELAAYRGWSRNTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESLTYQKKLAQYQMEKDLLYSSFQELKMWFDQMIKPAVQYEEETAKWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=982711 NST70_RS09965 WP_035188232.1 2082382..2084745(-) (recJ) [Weizmannia sp. FSL K6-0777]
ATGCTGCAGTCAAGAACAAGATGGCGGGTGCCGGAAATGGAACCAAAAGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGCTAGCGTATTATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCGGCCCGCATCCGCGAAGCGATTAAAAAAGAA
GAACCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGTACTGCCATCATGATGGCCGCTTTAAACGATCT
TGGCGCCCATGCTGAATTTTATATCCCGGACCGGTTTAAAGAAGGGTATGGGCCAAATGAAGCGGCTTTCCGCCGGGCGG
CTGAAGAGGGTTTTCAGCTAATCATTACCGTTGATACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCCCGCGAACTC
GGGATCACGCTCATTATTACGGACCATCACGAACCTGGGCCGGTATTGCCGGAAGCCTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TGCCGGAACAGCTTGAAGATTTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTTCTGGACGAAAACCGGCTGATT
GCCATAAACGGCATCAAACGGTTGAGAACGACAAAGCGGGCGGGGCTTGTGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATCAATGAAGAAACCATCGGCTTTGTGCTCGCCCCCCGCTTAAATGCAGCCGGGCGCCTGCAGCATGCGGCAC
CGGCAGCGGAACTGCTAATGACCGAAGACACAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGGCTCAATAAAGAA
CGGCAAAAAATCGTAAACGACATGACAAATGAAGCAATCGAACTGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGCTGGAATGCCGGCGTAATCGGCATTGCCGCCTCGCGCCTTACAGAACGCTTTTACCGGCCTG
CGATTGTGCTCAGCTTTGACCCGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGCATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGGCATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGAGGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTGCCGGACGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCGGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGACGGGGCCGAATGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GACGCTTTCTAAAAACGGCACAACGCTCGATGGGATCGGCTTCGGGCTCGGGCATCTTGCCCCGCATATTTCCCCTTCTG
CCTGCATATCGGTTGTCGGGGAGCTGTCCATCAACGAATGGAACAATATCCGTAAGCCGCAAATGATGGTGAAGGATATC
AAAATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGCACGGTACGTCCCGGAAGAAGA
CCAGGCTTTTGTTGTCTTCCAAAAAGAAACATTGCGGAACCTGCCGCTGCCGGATTTTTCCGTCCGCCTTGTGTCGGTTG
CGACAATGGAAGAGGCAAGGGCATTTGATCCTTCAAATAAAAACATTGTGTTTCTGGATCTTCCGAAAGGCCCGCGGATG
ATGGCGGCACTGCTTGAGGGCGGTTCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTCCCGACACGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTAAAGCAGCACGGGG
ATGAGCTGGCGGCTTATCGCGGCTGGTCGAGAAATACCATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTGAAAGCAGCCAAACAAAAACGCGATTTAAAGGAATCTCTTACGTATCAAAAAAA
ACTGGCACAATATCAAATGGAAAAGGACCTGCTGTACTCATCTTTCCAGGAGCTGAAGATGTGGTTTGACCAAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(454-559)

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.732

100

0.527

Multiple sequence alignment