Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MHH86_RS15740 Genome accession   NZ_CP151965
Coordinates   3504835..3506595 (-) Length   586 a.a.
NCBI ID   WP_076316420.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL F4-0097     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3499835..3511595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH86_RS15725 (MHH86_15725) - 3501179..3502138 (+) 960 WP_038574490.1 ABC transporter permease subunit -
  MHH86_RS15730 (MHH86_15730) - 3502152..3503087 (+) 936 WP_038571187.1 carbohydrate ABC transporter permease -
  MHH86_RS15735 (MHH86_15735) - 3503178..3504740 (+) 1563 WP_076316419.1 ABC transporter substrate-binding protein -
  MHH86_RS15740 (MHH86_15740) rcrQ 3504835..3506595 (-) 1761 WP_076316420.1 ABC transporter ATP-binding protein Regulator
  MHH86_RS15745 (MHH86_15745) rcrP 3506595..3508346 (-) 1752 WP_038571195.1 ABC transporter ATP-binding protein Regulator
  MHH86_RS15750 (MHH86_15750) - 3508466..3509521 (-) 1056 WP_080742500.1 HAMP domain-containing sensor histidine kinase -
  MHH86_RS15755 (MHH86_15755) - 3509518..3510192 (-) 675 WP_076105748.1 response regulator transcription factor -
  MHH86_RS15760 (MHH86_15760) - 3510517..3511482 (+) 966 WP_036677191.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64513.76 Da        Isoelectric Point: 6.5784

>NTDB_id=982457 MHH86_RS15740 WP_076316420.1 3504835..3506595(-) (rcrQ) [Paenibacillus sp. FSL F4-0097]
MNKSKEQLNTWSKLLHYCRKYIPVVLIAIISAAIGTVLTLLGPDKLSEMTDLITAGLVTGIDMEAVTSIGLFLVFIYILS
AVLSLVQGLIMSAVTQKVSKNLRADLSRKMNKLPISYYNNSTTGDILSRVTNDVDTIGQALNQSVGTLVTALALFTGSII
MMFKTNVIMTITAVVATIIGFGLIAAIMKKSQKYFQSQQEYLGKINGHVEEVYTGHTVVKAYNGESQMRNTFESLNMNLK
DSAFKAQFLSGLMMPIMMFIGNLGFVAVCVVGAVLAMNGTISFGVIVAFILYVRYFTQPLSQIAQAAQSLQSASAASKRV
FEFLDADEMDNESHKERHLKTATGKVDFEHVQFAYENSDKLVIKDFSAEIKPGQKIAIVGPTGAGKTTLINLLIRFNELK
GGEIYIDDTPISSLTRENIHDLFCMVLQDTWLFEGTIRENLVYNKTGVTDKEVEDACKSVGLHHFIQTLSAGYNTILNDK
VNLSTGQKQQLTIARAMLKNAPMLILDEATSSVDTRTELLIQQAMDKLMEGRTSFVIAHRLSTIKNADVILVLKEGDILE
SGSHEELLAKNGFYAELYNSQFDQAS

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=982457 MHH86_RS15740 WP_076316420.1 3504835..3506595(-) (rcrQ) [Paenibacillus sp. FSL F4-0097]
ATGAACAAAAGCAAAGAGCAACTCAACACGTGGAGCAAACTTCTCCACTATTGCAGAAAATATATCCCTGTAGTCCTTAT
AGCTATTATTAGTGCAGCAATCGGTACGGTTCTGACTTTGCTTGGACCGGATAAGCTTTCGGAGATGACAGACTTGATCA
CGGCGGGCCTCGTCACCGGAATTGATATGGAAGCAGTAACTTCTATCGGCCTTTTCCTTGTATTTATCTATATCCTTAGC
GCTGTGTTATCTTTGGTACAAGGATTAATTATGTCCGCAGTTACGCAAAAGGTCTCCAAAAACTTAAGAGCCGATCTCTC
ACGCAAAATGAACAAACTTCCAATTTCTTATTATAATAATTCTACAACCGGTGACATTCTGTCCCGGGTTACCAACGATG
TGGATACGATCGGGCAAGCTTTAAACCAAAGCGTCGGCACACTGGTAACTGCCCTTGCCCTCTTTACGGGATCCATCATC
ATGATGTTCAAAACAAATGTGATCATGACTATTACGGCGGTTGTTGCAACTATCATTGGCTTTGGCCTCATAGCGGCAAT
TATGAAAAAATCCCAAAAGTATTTTCAAAGTCAGCAAGAATACTTAGGGAAAATCAATGGTCATGTGGAGGAAGTATATA
CAGGACATACTGTAGTGAAAGCTTACAATGGTGAATCACAAATGCGCAATACATTTGAATCCCTGAATATGAATCTTAAA
GATAGTGCATTTAAAGCGCAGTTCCTCTCCGGTCTTATGATGCCGATTATGATGTTTATAGGCAATCTAGGTTTTGTGGC
CGTTTGTGTCGTTGGTGCTGTACTTGCTATGAACGGAACGATATCCTTTGGGGTCATTGTAGCCTTTATACTGTATGTCC
GTTACTTTACACAACCGCTCTCTCAGATTGCTCAAGCCGCACAAAGTCTGCAATCGGCTTCCGCGGCAAGCAAACGTGTC
TTTGAGTTCCTCGATGCTGATGAAATGGACAATGAAAGTCATAAAGAAAGACATCTTAAAACTGCAACGGGCAAAGTGGA
TTTTGAACATGTGCAATTTGCTTATGAAAATTCAGATAAACTTGTGATTAAAGATTTTTCTGCAGAGATTAAGCCTGGGC
AAAAAATTGCTATAGTCGGCCCTACCGGCGCAGGTAAAACTACACTGATAAATCTTCTAATACGGTTTAATGAATTAAAG
GGCGGAGAGATTTATATTGATGATACCCCCATCAGCAGCTTAACAAGAGAAAACATCCATGATCTATTCTGTATGGTCTT
GCAGGACACCTGGCTTTTTGAGGGCACTATCAGGGAAAATCTGGTGTACAACAAAACAGGTGTAACCGATAAAGAAGTTG
AAGATGCTTGTAAGTCGGTAGGCTTGCATCATTTCATTCAGACCTTAAGTGCCGGTTACAATACCATACTAAATGACAAG
GTTAATTTATCCACCGGCCAAAAGCAACAGCTTACCATCGCCCGCGCGATGCTCAAGAATGCTCCAATGCTCATCCTCGA
TGAAGCTACAAGCTCAGTCGATACAAGAACAGAGCTCTTGATTCAGCAGGCAATGGATAAGCTTATGGAAGGAAGAACCT
CCTTTGTTATTGCGCATAGACTCTCAACCATTAAGAACGCCGATGTGATTCTGGTTCTGAAGGAAGGCGATATTCTGGAA
AGCGGCAGCCACGAAGAACTACTTGCCAAAAATGGTTTCTATGCGGAGCTTTATAATAGCCAATTTGATCAAGCCTCTTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-300)

ABC transporter (ABC_tran)

(364-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.717

99.488

0.544

Multiple sequence alignment