Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MHH70_RS05030 Genome accession   NZ_CP151964
Coordinates   1047549..1049957 (-) Length   802 a.a.
NCBI ID   WP_107942444.1    Uniprot ID   -
Organism   Metasolibacillus sp. FSL H7-0170     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1042549..1054957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH70_RS05010 (MHH70_05010) - 1042938..1043228 (-) 291 WP_066171427.1 DUF1292 domain-containing protein -
  MHH70_RS05015 (MHH70_05015) ruvX 1043363..1043785 (-) 423 WP_107942446.1 Holliday junction resolvase RuvX -
  MHH70_RS05020 (MHH70_05020) - 1043782..1044054 (-) 273 WP_066171433.1 IreB family regulatory phosphoprotein -
  MHH70_RS05025 (MHH70_05025) alaS 1044258..1046918 (-) 2661 WP_066171436.1 alanine--tRNA ligase -
  MHH70_RS05030 (MHH70_05030) recD2 1047549..1049957 (-) 2409 WP_107942444.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MHH70_RS05035 (MHH70_05035) hisA 1050451..1051206 (+) 756 WP_107943085.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  MHH70_RS05040 (MHH70_05040) - 1051230..1051520 (+) 291 WP_066171443.1 hypothetical protein -
  MHH70_RS05045 (MHH70_05045) - 1051668..1052180 (-) 513 WP_342472710.1 TraR/DksA C4-type zinc finger protein -
  MHH70_RS05050 (MHH70_05050) - 1052236..1052895 (-) 660 WP_107942442.1 tetratricopeptide repeat protein -
  MHH70_RS05055 (MHH70_05055) mnmA 1052940..1054061 (-) 1122 WP_342472711.1 tRNA 2-thiouridine(34) synthase MnmA -

Sequence

Protein


Download         Length: 802 a.a.        Molecular weight: 89019.29 Da        Isoelectric Point: 4.7405

>NTDB_id=982416 MHH70_RS05030 WP_107942444.1 1047549..1049957(-) (recD2) [Metasolibacillus sp. FSL H7-0170]
MVENLNLFELEKRFVLGRPIVSIFHNATNMYSIIRVKIQETNLAYEEKEIIVVGYFPPLSEDELYRFTGNIKTHPKYGVQ
FQIETFEKEVPATEQGVIQYLSSDLFIGIGRKTAETIVEKLGVDALKIIMDNPSALDVIPRLSDEKKQTIVDVIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYREDTITLLTENPYRLIEEIEGIGFGRADDLGSKLGITGNHPDRIKAAIFHVLTAAA
LSDGHVYLEAEQVLPTVKSMLEQSQRVEIPFEAISQACIEMREESKICGEETRMYLPSLYFSEVGIASKILELVANNKKQ
SHFSKDEILKAIGELEERDGVQYAPSQVAAIECALQNAVMILTGGPGTGKTTVVKGLVEVYAELHGLSLDPKTYAKKEEP
FPIILVAPTGRAAKRLAESTSLPAMTIHRLLGFTGQEKEEETEREITGRLVIVDEMSMVDTWLAHQLLKSLAKDVQVVFV
GDQDQLPPVGPGQVLKDLLTSKQVPTVELTDVYRQAEGSTIIDIAHQIKQGTVPPTITQKTADRSFIQASTEQIVSVVTQ
IVKSATAKGQAIRDIQVLAPMYKGPAGIDALNKQIQELVNPNDGTRKELAFGDTVYRIGDKVLQLVNQPDSNVFNGDMGE
VVAIIKAKETVEKQDLLVVSYDGIEVTYQRGDLNQITLAYCCSIHKSQGSEFQTVIMPIVRGYSKMLRRNLLYTGITRAK
NFLILCGEPDVLAQGLMKTDDLQRFTSLTARLNPMDEEIVEVIAEAQESYTTSTPPILNAETAPYIHPLIGMEGIAPSDF
MK

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=982416 MHH70_RS05030 WP_107942444.1 1047549..1049957(-) (recD2) [Metasolibacillus sp. FSL H7-0170]
CTGGTGGAGAACTTAAATTTATTTGAGCTAGAAAAACGCTTTGTACTAGGTCGCCCAATCGTCTCTATTTTTCATAATGC
TACAAATATGTATTCTATCATACGTGTGAAAATTCAAGAAACAAATTTAGCTTATGAAGAAAAGGAGATTATCGTTGTTG
GCTATTTTCCGCCGCTGTCAGAGGATGAGCTTTATCGCTTCACAGGCAATATAAAAACACATCCCAAATACGGAGTACAG
TTTCAAATTGAGACATTTGAAAAGGAAGTACCTGCTACGGAACAGGGTGTTATTCAATATTTATCAAGCGATTTATTTAT
AGGGATTGGTCGTAAAACGGCTGAAACAATTGTTGAAAAGCTTGGTGTCGATGCATTGAAAATAATTATGGATAATCCGA
GTGCACTCGATGTGATTCCGAGATTATCTGACGAAAAAAAGCAAACAATCGTTGACGTAATCGAACAAAATTTAGGCTTA
GAGCGTGTGATGATTCAATTAAATGAGTGGGGGTTCGGACCGCAGCTCGGCATGAAAATTTATCAAACATATCGCGAGGA
CACAATCACTCTATTGACAGAAAATCCGTATCGTTTAATCGAGGAAATAGAGGGAATTGGCTTTGGACGTGCCGACGATT
TAGGCTCAAAGCTCGGCATTACAGGCAATCACCCTGACCGCATTAAAGCAGCTATTTTTCATGTTTTAACAGCAGCCGCA
TTATCCGATGGGCATGTTTATTTAGAGGCGGAGCAGGTGCTGCCGACAGTTAAGTCAATGCTAGAACAAAGCCAGCGAGT
TGAAATCCCATTTGAGGCAATTTCGCAGGCTTGCATTGAAATGCGTGAGGAGAGCAAAATTTGTGGTGAGGAAACGCGCA
TGTACTTACCATCACTCTATTTTAGTGAGGTGGGCATCGCCTCGAAAATCTTAGAGCTTGTAGCGAACAATAAGAAGCAG
TCGCATTTTTCTAAGGATGAAATTTTAAAGGCAATTGGCGAGCTAGAGGAGCGTGATGGGGTACAATATGCACCTTCGCA
AGTCGCAGCAATTGAGTGCGCTTTGCAAAATGCGGTAATGATTTTAACAGGTGGACCGGGTACAGGTAAAACGACTGTTG
TGAAAGGGCTTGTAGAAGTATATGCAGAGCTACACGGCCTGTCGCTTGACCCAAAAACATATGCTAAAAAAGAAGAGCCA
TTTCCTATTATATTAGTAGCACCGACAGGACGAGCCGCCAAGCGTTTGGCTGAATCTACCAGCTTACCTGCAATGACAAT
TCATCGTTTATTAGGATTCACAGGTCAGGAAAAAGAAGAGGAAACAGAGCGTGAAATCACAGGACGTCTTGTCATTGTAG
ATGAAATGTCAATGGTCGATACATGGCTTGCGCACCAGCTACTCAAAAGCTTAGCAAAAGATGTCCAAGTGGTTTTTGTT
GGTGACCAAGACCAGTTACCGCCAGTTGGGCCGGGGCAAGTATTGAAGGACTTATTAACATCAAAGCAAGTGCCAACTGT
GGAATTAACAGATGTTTACAGGCAAGCAGAGGGCTCAACGATTATTGATATTGCCCATCAAATTAAGCAAGGTACAGTTC
CGCCCACAATAACTCAAAAAACAGCAGACCGCTCCTTTATCCAAGCATCGACTGAGCAAATTGTGAGCGTTGTCACACAA
ATTGTCAAAAGTGCAACGGCAAAGGGTCAGGCGATACGTGATATTCAAGTGTTAGCACCAATGTACAAGGGACCAGCAGG
CATTGATGCATTAAATAAGCAAATTCAAGAGCTTGTTAACCCGAATGACGGCACGCGTAAGGAGTTAGCATTTGGCGATA
CCGTTTATCGCATTGGTGATAAGGTGCTACAGCTTGTCAATCAACCAGATAGCAACGTATTCAATGGTGATATGGGGGAG
GTTGTTGCGATAATAAAGGCAAAAGAAACGGTGGAAAAGCAAGATTTGCTCGTTGTCTCATATGACGGGATTGAAGTAAC
GTATCAGCGCGGTGACTTAAATCAAATAACATTAGCATACTGCTGCTCCATTCATAAATCACAAGGCTCTGAATTCCAAA
CGGTTATTATGCCAATTGTACGCGGTTACTCGAAAATGCTGCGTCGCAATTTATTGTATACAGGCATTACGCGAGCAAAA
AACTTTTTAATTTTGTGCGGAGAGCCAGATGTGTTAGCACAGGGCTTAATGAAAACGGATGATTTACAGCGTTTTACAAG
CCTGACTGCCCGATTAAATCCAATGGATGAAGAAATTGTTGAAGTAATTGCTGAAGCACAAGAAAGCTATACAACATCTA
CGCCACCTATTTTAAATGCAGAAACAGCTCCCTATATTCATCCGTTGATTGGTATGGAGGGCATCGCACCATCAGATTTT
ATGAAATAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-726)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-651)

AAA domain (AAA_30)

(343-550)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.889

99.252

0.525

Multiple sequence alignment