Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MHI30_RS14690 Genome accession   NZ_CP151961
Coordinates   2879155..2881551 (-) Length   798 a.a.
NCBI ID   WP_075752055.1    Uniprot ID   -
Organism   Bacillus sp. FSL L8-0528     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2874155..2886551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS14670 (MHI30_14670) - 2877102..2878160 (-) 1059 WP_016885530.1 AI-2E family transporter -
  MHI30_RS14675 (MHI30_14675) - 2878248..2878379 (-) 132 WP_003183926.1 YrzQ family protein -
  MHI30_RS14680 (MHI30_14680) - 2878395..2878586 (-) 192 WP_016885531.1 hypothetical protein -
  MHI30_RS14685 (MHI30_14685) - 2878602..2879066 (-) 465 WP_075752056.1 PRC-barrel domain-containing protein -
  MHI30_RS14690 (MHI30_14690) recD2 2879155..2881551 (-) 2397 WP_075752055.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MHI30_RS14695 (MHI30_14695) - 2881603..2882253 (-) 651 WP_016885534.1 tetratricopeptide repeat protein -
  MHI30_RS14700 (MHI30_14700) mnmA 2882348..2883466 (-) 1119 WP_075752054.1 tRNA 2-thiouridine(34) synthase MnmA -
  MHI30_RS14705 (MHI30_14705) - 2883572..2884711 (-) 1140 WP_016885536.1 cysteine desulfurase family protein -
  MHI30_RS14710 (MHI30_14710) cymR 2884732..2885148 (-) 417 WP_023855382.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89775.37 Da        Isoelectric Point: 4.9449

>NTDB_id=982271 MHI30_RS14690 WP_075752055.1 2879155..2881551(-) (recD2) [Bacillus sp. FSL L8-0528]
MQRHNPDQIEMEEASFVKGTVAAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGAVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIDTRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLTAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQILAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=982271 MHI30_RS14690 WP_075752055.1 2879155..2881551(-) (recD2) [Bacillus sp. FSL L8-0528]
ATGCAGCGCCATAACCCGGACCAAATTGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTTGCGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTATTAAAAGTAAAAGTGGAAGAAACATCGGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACCGGTTACTTTCCTTTGATCCATGAAGATGATATCTACACTTTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAAGAAGTACCGACAACGAAAGAAGGCGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAGAAAACGGCCGAGGAAATTGTTAATAAGCTTGGGGAAGGTGCGATCAACAAAATTTTAAGCG
ACGGGGCCGTCCTGTATGATGTTCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTGCAGCAGCATCAG
GGGCTCGAGCAGATTATGATCTCCCTGAGCGAATTCGGTTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTACGA
AGCGGAAACGCTTGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAGGATGTCGAAGGAATCGGCTTTATCAAGGCAG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGTAAACATGAAGAGCGGATCAAGGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACGTACATAGACACGAGACAGCTTATCATCGAGACGCAAAAACTGTTAAACCAGTCTGC
AGGTGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCTCTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTACTATCCGTCCCTTTACTACGCCGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGTCAAAAAGAAGCGATTCAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACAGGCGGACCGGGAACCGGGAAAA
CGACCGTCATCAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAGGAT
GAAACGTTTCCGTTTGTGCTGGCAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGGCTGCCGGCCGT
AACGATTCACAGGCTTCTCGGCTGGAATGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGAAGGGCGGCTGC
TCATCATTGATGAAACGAGCATGCTTGATATATGGCTCGCCAACCAATTATTCAAGGCGATCCCAGACCGGATACAGGTG
ATTATGGTCGGAGACGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTAAGGGATCTTTTGGCATCGAATGTCAT
TCCTTCTGTCAGACTAACCGATATTTACAGGCAGGCTGAAGGCTCTTCAATCGTTGAACTGGCGCATGAAATGAAACAAG
GAAAGCTTCCGGAAAACTTGACCGCGCCGACAAAAGACCGTTCTTTCATTCGCTGCCGCCAGCAGCAGATCAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGATATTCGGCCAGGGATATTCAGATTTTGGCTCCGATGTACAGGGG
AGCGGCCGGCATCAACGAGTTAAACGCGCTTTTGCAGGGCATCCTGAATCCCCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGCGATGTCGTGTACCGTACCGGCGATAAAGTGCTCCAGCTCGTCAACCAGCCGGAGCACAACGTGTTTAACGGTGAC
ATGGGTGAGATCGTCTCGATTTTTTATGCAAAAGAAAATACGGAAAAAGAAGATATGGCCGTCGTCTCTTTTGACGGGAA
TGAAATTACCTTTACAAAAAAAGATTTTAACCAATTTACGCACGCCTATTGCTGTTCGATCCACAAATCGCAGGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGGATGCTGAGAAGGAACTTGCTTTACACGGCCATCACA
AGAAGCAAGAAATTCCTGATTCTGTGCGGGGAAGAAGAAGCCCTTGAATGGGGCGTGAAAAATAAAGAATCATCGGAAAG
GCAGACATCGCTTAAAAGAAGGCTTCAGCAGGCGGCGCATGAAGAGGATGAAGAGCTCATGGCGCTGCAAAAAGAGCTGC
CTTTCAGCGTATATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-554)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.727

100

0.818

Multiple sequence alignment