Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MHI30_RS08825 Genome accession   NZ_CP151961
Coordinates   1732837..1733616 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus sp. FSL L8-0528     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1727837..1738616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI30_RS08805 (MHI30_08805) trmFO 1728534..1729838 (+) 1305 WP_075752845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MHI30_RS08810 (MHI30_08810) xerC 1729905..1730819 (+) 915 WP_020451383.1 tyrosine recombinase XerC -
  MHI30_RS08815 (MHI30_08815) hslV 1730833..1731378 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  MHI30_RS08820 (MHI30_08820) hslU 1731386..1732798 (+) 1413 WP_256163786.1 HslU--HslV peptidase ATPase subunit -
  MHI30_RS08825 (MHI30_08825) codY 1732837..1733616 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MHI30_RS08830 (MHI30_08830) flgB 1733969..1734358 (+) 390 WP_075752843.1 flagellar basal body rod protein FlgB -
  MHI30_RS08835 (MHI30_08835) flgC 1734358..1734810 (+) 453 WP_020451388.1 flagellar basal body rod protein FlgC -
  MHI30_RS08840 (MHI30_08840) fliE 1734824..1735141 (+) 318 WP_075752841.1 flagellar hook-basal body complex protein FliE -
  MHI30_RS08845 (MHI30_08845) fliF 1735192..1736793 (+) 1602 WP_075752839.1 flagellar basal-body MS-ring/collar protein FliF -
  MHI30_RS08850 (MHI30_08850) fliG 1736807..1737823 (+) 1017 WP_043926372.1 flagellar motor switch protein FliG -
  MHI30_RS08855 (MHI30_08855) fliH 1737807..1738574 (+) 768 WP_154495680.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=982254 MHI30_RS08825 WP_003181756.1 1732837..1733616(+) (codY) [Bacillus sp. FSL L8-0528]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=982254 MHI30_RS08825 WP_003181756.1 1732837..1733616(+) (codY) [Bacillus sp. FSL L8-0528]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCCGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACTTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTGAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTGCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment