Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MKY35_RS12265 Genome accession   NZ_CP151960
Coordinates   2790084..2791934 (+) Length   616 a.a.
NCBI ID   WP_342446514.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0638     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2785084..2796934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY35_RS12245 (MKY35_12245) - 2785996..2787018 (+) 1023 WP_342446510.1 NADH:flavin oxidoreductase/NADH oxidase -
  MKY35_RS12250 (MKY35_12250) - 2787103..2787336 (+) 234 WP_342446511.1 hypothetical protein -
  MKY35_RS12255 (MKY35_12255) - 2787844..2788254 (+) 411 WP_342446512.1 MarR family transcriptional regulator -
  MKY35_RS12260 (MKY35_12260) rcrP 2788328..2790091 (+) 1764 WP_342446513.1 ABC transporter ATP-binding protein Regulator
  MKY35_RS12265 (MKY35_12265) rcrQ 2790084..2791934 (+) 1851 WP_342446514.1 ABC transporter ATP-binding protein Regulator
  MKY35_RS12270 (MKY35_12270) - 2792056..2792364 (+) 309 WP_342446515.1 hypothetical protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67980.38 Da        Isoelectric Point: 5.8967

>NTDB_id=982204 MKY35_RS12265 WP_342446514.1 2790084..2791934(+) (rcrQ) [Paenibacillus sp. FSL L8-0638]
MDKNEHTVDSQQMKMNQPGPMGKDPAGGRDGGEKANNFKKTISQLASYSKAYVPMIILAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVFVLSLLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIVATLIGFSLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTTKLETAKGDVEFKHVRFGYNADRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=982204 MKY35_RS12265 WP_342446514.1 2790084..2791934(+) (rcrQ) [Paenibacillus sp. FSL L8-0638]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCCAGGTCCCATGGGCAAAGATCCCGCGGG
GGGCAGGGATGGTGGTGAAAAAGCAAATAATTTTAAAAAGACCATCAGCCAGCTTGCATCCTACAGCAAGGCCTATGTGC
CTATGATTATACTCGCTATGGTACTGGCCCTGGTCGGCTCTACCCTCAACGTGATTGGCCCAGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTTTTGTATTATCGCTTTT
ATATGGATTTGGTCTTATTTTTAACTATTTTCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GAACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACAAACGATGTCGATACCATCGGACAAACGCTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCCACTTTCGT
GGGAGCCTTGATTATGATGCTGTATACGAACTGGATCATGACCGTTACCGGAATTGTAGCTACGCTGATCGGCTTTAGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTCTATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTCTGTGTTGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACCATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCTGCAACCAATCTGCAATCGGCGGCCGCTGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCACGAAGCTGGAAACCGCCA
AAGGGGACGTCGAATTCAAACATGTCCGTTTCGGCTATAATGCAGACCGTATGATTATCAAGGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCTGGTAAGACCACGCTCGTGAATTTACTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACTCCGATTAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACTGAT
GAGCAGGTAGAAGCTGCATGTAGAGCGGTGGGACTGCACAGTTTCATTAAAACACTGCCGCAGGGATATGATACAGTTCT
GGATGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGGGCGATGATTGAAGATTCACCTATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAAAATGCGGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTAGCAAAAGGCGGCTTCTATGCCGATCTATACAATAGTCAGTTTGAAC
ATGCGTCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(57-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.499

93.669

0.529

Multiple sequence alignment