Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NST40_RS15400 Genome accession   NZ_CP151956
Coordinates   3481919..3483670 (-) Length   583 a.a.
NCBI ID   WP_076130605.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R10-2778     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3476919..3488670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST40_RS15385 (NST40_15385) - 3477468..3478403 (+) 936 WP_081383287.1 carbohydrate ABC transporter permease -
  NST40_RS15390 (NST40_15390) - 3478494..3480056 (+) 1563 WP_076130604.1 ABC transporter substrate-binding protein -
  NST40_RS15395 (NST40_15395) rcrQ 3480159..3481919 (-) 1761 WP_076219233.1 ABC transporter ATP-binding protein Regulator
  NST40_RS15400 (NST40_15400) rcrP 3481919..3483670 (-) 1752 WP_076130605.1 ABC transporter ATP-binding protein Regulator
  NST40_RS15405 (NST40_15405) - 3483790..3484845 (-) 1056 WP_081387692.1 HAMP domain-containing sensor histidine kinase -
  NST40_RS15410 (NST40_15410) - 3484842..3485516 (-) 675 WP_036677195.1 response regulator transcription factor -
  NST40_RS15415 (NST40_15415) - 3485842..3486807 (+) 966 WP_076281835.1 aldo/keto reductase -
  NST40_RS15420 (NST40_15420) - 3486844..3487695 (+) 852 WP_342409673.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63914.40 Da        Isoelectric Point: 7.2156

>NTDB_id=982067 NST40_RS15400 WP_076130605.1 3481919..3483670(-) (rcrP) [Paenibacillus sp. FSL R10-2778]
MVTILKYLKPKEWALIGISILFIVTQVWLDLELPGYMSEITRLVQIPGSEMSEIIAAGGWMLLCALGSLATSIIVAGIAA
KIAANFSSRLRSKLFDKVQSFSMEEINNFSTASLITRSTNDITQVQMLIVIGLQLLVKAPILAVWAMLKITGKSWQWSLA
TGVAIGVLILIVGIVIVLVLPKFQKLQQLTDNLNRVARENLTGLRVIRAYNAESYQEDKFSVANSELTRTNLFANNVLSM
MMPSISLIMSGLSLAIYWIGAILIQNANGTAKMGLFSDMIVFSSYAMQVVMAFMMLIMIFILMPRAHVSAKRINEVLDTK
PSLENGSLTSSKANRLGEVEFKNVSFKYPDAEEYVIEDISFTVKKGETVAFIGSTGCGKSTVVNLIPRFYDATAGEVLVD
GINVNQYEQTALRNKMGYVSQKAILFGGTVSSNVAFGDNGSDLSSDVVDAIYTSQASDFVEKMEGSYEAHVSQGGTNLSG
GQKQRLSIARAIARRPEILIFDDSFSALDYKTDRKLRSELKKKSSGTTILIVAQRIGTIKDADKIIVLEAGRMAGMGTHD
ELMQTCDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=982067 NST40_RS15400 WP_076130605.1 3481919..3483670(-) (rcrP) [Paenibacillus sp. FSL R10-2778]
ATGGTAACTATACTTAAGTACTTAAAACCGAAGGAATGGGCCCTAATCGGTATCAGCATCCTATTCATTGTCACACAGGT
ATGGCTGGATCTGGAATTGCCCGGTTATATGAGCGAGATTACTCGTCTTGTACAGATACCAGGGAGTGAAATGAGCGAAA
TCATTGCAGCCGGAGGCTGGATGTTGCTCTGTGCCCTCGGCAGCTTAGCTACATCAATCATAGTGGCAGGGATCGCCGCT
AAAATTGCCGCTAACTTCTCTTCAAGATTACGCTCTAAATTGTTTGATAAGGTACAATCTTTTTCTATGGAAGAAATCAA
CAACTTCTCTACAGCTAGTTTAATTACCCGTTCAACGAATGACATTACGCAAGTGCAAATGCTGATTGTCATTGGTCTGC
AACTGCTGGTGAAGGCTCCCATCCTTGCCGTTTGGGCAATGCTCAAAATTACAGGCAAGAGTTGGCAGTGGTCGCTTGCT
ACCGGTGTCGCCATTGGGGTATTGATTCTTATTGTCGGCATAGTGATCGTGCTAGTGCTTCCGAAATTCCAAAAATTGCA
GCAACTGACTGATAATCTTAATCGTGTTGCAAGAGAGAATCTTACCGGCCTTCGTGTCATTCGTGCGTATAATGCGGAAA
GTTACCAGGAAGATAAATTTAGCGTAGCCAACAGCGAGCTTACCCGAACGAATTTATTCGCCAATAATGTACTGTCCATG
ATGATGCCAAGTATTTCTCTGATTATGAGCGGTTTAAGTCTCGCAATATATTGGATTGGTGCTATTTTGATTCAAAATGC
CAATGGTACGGCGAAGATGGGCTTATTTTCAGATATGATTGTCTTCTCATCCTATGCAATGCAGGTGGTTATGGCATTCA
TGATGCTGATCATGATTTTTATCCTGATGCCTCGTGCCCATGTATCCGCTAAAAGAATCAATGAAGTGCTGGATACTAAG
CCAAGCTTAGAGAACGGATCACTTACTTCCTCCAAGGCAAATCGGTTGGGTGAGGTCGAATTCAAAAATGTCAGCTTTAA
ATATCCGGATGCAGAAGAATACGTTATTGAAGATATCAGCTTTACGGTGAAAAAAGGAGAAACTGTAGCCTTCATCGGTT
CAACCGGATGCGGAAAAAGTACCGTCGTGAACCTGATTCCTCGCTTTTATGATGCTACAGCAGGTGAAGTGTTGGTGGAT
GGAATTAATGTTAACCAATATGAGCAAACTGCACTGCGCAATAAAATGGGATATGTATCTCAGAAAGCGATTTTGTTTGG
CGGCACGGTGAGCTCTAATGTTGCTTTTGGCGATAATGGCAGTGATCTGTCCTCGGATGTTGTTGATGCCATTTACACCT
CTCAAGCTTCAGATTTTGTTGAAAAGATGGAAGGAAGCTACGAGGCTCATGTCTCTCAAGGCGGTACGAACTTGTCTGGC
GGTCAAAAACAACGTCTTTCCATTGCCCGAGCCATTGCCCGTCGTCCTGAAATATTAATCTTCGACGATTCCTTCTCAGC
GCTTGATTATAAGACGGATCGCAAATTGCGAAGTGAATTGAAGAAAAAATCCAGCGGTACAACGATACTAATCGTTGCCC
AGCGTATCGGTACAATCAAAGATGCAGACAAAATCATTGTACTGGAAGCCGGACGAATGGCAGGCATGGGAACACATGAT
GAATTGATGCAGACCTGTGATGTCTACCAAGAGATTGCTTACTCACAACTTTCAAAGGAGGAGCTAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-504)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.013

100

0.532

Multiple sequence alignment