Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NST20_RS09595 Genome accession   NZ_CP151954
Coordinates   1941199..1943562 (-) Length   787 a.a.
NCBI ID   WP_342399348.1    Uniprot ID   -
Organism   Weizmannia sp. FSL W8-0676     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1936199..1948562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST20_RS09570 (NST20_09570) - 1936541..1937191 (-) 651 WP_342399345.1 HlyD family efflux transporter periplasmic adaptor subunit -
  NST20_RS09575 (NST20_09575) - 1937199..1937639 (-) 441 WP_342399346.1 MarR family transcriptional regulator -
  NST20_RS09580 (NST20_09580) dtd 1937822..1938262 (-) 441 WP_342399347.1 D-aminoacyl-tRNA deacylase -
  NST20_RS09585 (NST20_09585) - 1938276..1940465 (-) 2190 WP_019720840.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NST20_RS09590 (NST20_09590) - 1940687..1941208 (-) 522 WP_013859780.1 adenine phosphoribosyltransferase -
  NST20_RS09595 (NST20_09595) recJ 1941199..1943562 (-) 2364 WP_342399348.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NST20_RS09600 (NST20_09600) secDF 1943651..1945915 (-) 2265 WP_342399349.1 protein translocase subunit SecDF -
  NST20_RS09605 (NST20_09605) - 1946061..1946381 (-) 321 WP_237348250.1 post-transcriptional regulator -
  NST20_RS09610 (NST20_09610) spoVB 1946484..1948028 (+) 1545 WP_041819186.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 87898.89 Da        Isoelectric Point: 5.7409

>NTDB_id=982003 NST20_RS09595 WP_342399348.1 1941199..1943562(-) (recJ) [Weizmannia sp. FSL W8-0676]
MLQSRTRWRVPETDPEAAATISQQLNVSPLVSKLLVNRGITDVEEARSFLFHEGAEYHDPFLLHDMEKAAARIREAIKRE
EPVLVFGDYDADGVTSTVIMMAVLNDLGARAEFYIPDRFKEGYGPNEAAFRRAAEEGFQLIITVDTGIAAVHEAEVAREL
GIPLIITDHHEPGPVLPEAFAIVHPKHPESTYPFRELSGAGVAFKVAHALYGKVPEQLEELAAIGTVADLVPLLDENRLI
AANGIKRLRTTKRPGLAALCRCADIRQEEINEETIGFVLAPRLNAAGRLQHAAPAAELLMTENAEEAGMLAETIDGLNKE
RQKIVNEMTNEAIEMVEEEVEKGARVLVVGKEGWNAGVIGIAASRLTERFYRPAIVLSFDLETGLAKGSARSIDGFHMFN
ELSKCRDILPHFGGHPMAAGMTLSLSDVDELRRRLNEQAAALPDEMFVPVTNISAEISIEEAGMEAIREMALLSPFGTAN
PKPLLLLDGAYCPQIRAIGADGKHLKLALSKNGTTLDGVGFGLGNLAPHISPSACISVVGELSINEWNNIRKPQMMVKDI
KITNWQLFDFRGNRPLKQWVGHVPEDGQAFVVFQKETLRKLSLPDFSVRLVPVETMEEARAFDPANKNIVFLDLPPGPKM
MAVLLEGGAPARIYAYFYHAGNHFFSTFPTREHFKWFYAFLAKRKTFNLKRHGDELAAYRGWSRNTIDFISQVFFELDFV
TIKDGFISLKAAKQKRDLKESFTYQKKLAQYQMEKDLLYSSFHELKMWFDQMIKPAVQYEEETAKWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=982003 NST20_RS09595 WP_342399348.1 1941199..1943562(-) (recJ) [Weizmannia sp. FSL W8-0676]
ATGCTGCAGTCAAGAACAAGGTGGCGGGTGCCGGAAACCGATCCGGAGGCAGCCGCAACGATCTCGCAACAATTGAACGT
TTCGCCACTTGTTTCAAAATTGCTTGTAAACCGCGGCATAACGGATGTTGAAGAAGCGCGGTCTTTTTTATTCCATGAAG
GGGCAGAATACCATGATCCGTTTTTGCTGCATGATATGGAAAAAGCAGCCGCCCGTATCCGCGAAGCGATTAAAAGGGAA
GAGCCGGTTCTCGTCTTCGGCGATTACGATGCGGACGGCGTAACGAGCACCGTGATCATGATGGCCGTTTTAAACGATCT
TGGCGCCCGTGCGGAATTTTATATCCCGGACCGGTTTAAAGAGGGGTACGGGCCAAATGAGGCGGCTTTCCGGCGGGCGG
CTGAAGAAGGATTCCAGCTGATCATTACCGTGGACACCGGTATTGCCGCTGTCCACGAAGCGGAAGTGGCCCGCGAACTG
GGGATCCCGCTCATTATTACGGACCATCACGAACCCGGGCCGGTGTTGCCGGAAGCTTTTGCCATCGTCCATCCGAAGCA
TCCGGAAAGTACATACCCGTTCCGGGAACTGTCGGGCGCAGGCGTCGCTTTTAAAGTCGCCCATGCGCTGTACGGCAAAG
TGCCGGAACAACTTGAAGAACTGGCCGCTATCGGGACGGTCGCGGATCTTGTGCCGCTTCTGGATGAAAACCGGCTGATT
GCCGCAAACGGCATCAAACGGCTGAGAACAACAAAGCGGCCTGGGCTTGCGGCGCTGTGCCGGTGTGCGGATATCCGCCA
GGAAGAGATTAACGAAGAAACAATCGGCTTTGTGCTCGCCCCCCGCTTAAATGCGGCCGGGCGCCTGCAACATGCGGCAC
CGGCAGCAGAACTGCTGATGACCGAAAACGCAGAAGAAGCCGGGATGCTCGCTGAAACGATTGACGGGCTCAATAAAGAA
CGGCAAAAAATCGTAAACGAGATGACAAATGAAGCAATCGAAATGGTGGAAGAAGAAGTGGAAAAGGGGGCGCGTGTCCT
TGTTGTCGGGAAAGAAGGATGGAATGCCGGCGTAATCGGCATTGCCGCCTCGCGCCTTACAGAACGCTTTTACCGGCCTG
CGATTGTGCTCAGCTTTGATCTGGAAACAGGGCTGGCAAAAGGATCGGCGCGCAGTATTGACGGCTTCCATATGTTTAAC
GAATTATCGAAATGCAGGGATATTTTGCCGCATTTTGGCGGACATCCGATGGCGGCGGGGATGACGCTTTCTTTATCCGA
TGTGGATGAACTGCGGCGCCGGCTGAACGAACAGGCCGCGGCATTGCCGGATGAGATGTTTGTGCCGGTTACGAACATCA
GCGCTGAAATTTCCATAGAAGAAGCAGGGATGGAAGCGATCCGCGAAATGGCATTGCTCTCGCCGTTTGGCACGGCGAAT
CCGAAGCCGCTTCTGTTGCTGGATGGGGCCTATTGCCCGCAAATCCGGGCGATCGGCGCAGACGGGAAACATTTGAAATT
GGCGCTTTCCAAAAACGGCACAACGCTCGATGGAGTCGGCTTCGGGCTCGGAAATCTTGCCCCGCATATTTCCCCTTCTG
CCTGCATATCGGTTGTCGGGGAACTGTCCATCAATGAATGGAATAATATCCGCAAGCCGCAAATGATGGTCAAGGACATC
AAAATCACAAACTGGCAATTGTTTGATTTCAGGGGCAACAGGCCTTTAAAGCAATGGGTCGGGCACGTCCCGGAAGATGG
CCAGGCTTTTGTTGTGTTCCAAAAAGAAACATTGCGGAAACTGTCGCTGCCGGATTTTTCCGTCCGCCTTGTGCCGGTGG
AGACAATGGAAGAGGCAAGGGCATTTGACCCGGCAAATAAAAATATTGTGTTTCTTGATCTTCCGCCAGGCCCGAAGATG
ATGGCGGTACTGCTTGAAGGCGGTGCGCCGGCCAGGATTTATGCGTATTTTTACCATGCCGGGAACCACTTTTTCAGCAC
GTTTCCGACGCGCGAACATTTTAAATGGTTTTACGCTTTTCTTGCAAAAAGGAAAACGTTCAACCTGAAGCGGCACGGGG
ATGAGCTGGCGGCTTACCGCGGCTGGTCGAGAAATACGATCGATTTTATTTCGCAGGTGTTTTTTGAACTTGATTTTGTT
ACAATAAAGGATGGATTTATTTCCCTGAAAGCAGCCAAACAAAAACGCGATTTAAAGGAATCTTTTACGTATCAGAAAAA
ACTGGCACAATATCAAATGGAAAAGGACCTGCTGTACTCATCTTTCCATGAGCTGAAGATGTGGTTTGACCAAATGATCA
AGCCTGCTGTACAGTATGAGGAGGAAACAGCAAAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(454-559)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.113

100

0.531

Multiple sequence alignment