Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NYE22_RS13575 Genome accession   NZ_CP151946
Coordinates   2532002..2532781 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus sp. FSL K6-1560     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2527002..2537781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS13545 (NYE22_13545) fliH 2527020..2527772 (-) 753 WP_032725764.1 flagellar assembly protein FliH -
  NYE22_RS13550 (NYE22_13550) fliG 2527765..2528781 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  NYE22_RS13555 (NYE22_13555) fliF 2528794..2530404 (-) 1611 WP_342411916.1 flagellar basal-body MS-ring/collar protein FliF -
  NYE22_RS13560 (NYE22_13560) fliE 2530450..2530770 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  NYE22_RS13565 (NYE22_13565) flgC 2530781..2531233 (-) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  NYE22_RS13570 (NYE22_13570) flgB 2531233..2531622 (-) 390 WP_161985995.1 flagellar basal body rod protein FlgB -
  NYE22_RS13575 (NYE22_13575) codY 2532002..2532781 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NYE22_RS13580 (NYE22_13580) hslU 2532821..2534233 (-) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  NYE22_RS13585 (NYE22_13585) clpQ 2534241..2534786 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  NYE22_RS13590 (NYE22_13590) xerC 2534799..2535713 (-) 915 WP_161985994.1 tyrosine recombinase XerC -
  NYE22_RS13595 (NYE22_13595) trmFO 2535781..2537088 (-) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=981725 NYE22_RS13575 WP_003220850.1 2532002..2532781(-) (codY) [Bacillus sp. FSL K6-1560]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=981725 NYE22_RS13575 WP_003220850.1 2532002..2532781(-) (codY) [Bacillus sp. FSL K6-1560]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment