Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSS81_RS04860 Genome accession   NZ_CP151943
Coordinates   909635..912049 (-) Length   804 a.a.
NCBI ID   WP_342432413.1    Uniprot ID   -
Organism   Neobacillus sp. FSL H8-0543     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 904635..917049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS81_RS04840 (NSS81_04840) - 907576..908643 (-) 1068 WP_342432409.1 AI-2E family transporter -
  NSS81_RS04845 (NSS81_04845) - 908762..908896 (-) 135 WP_342432410.1 YrzQ family protein -
  NSS81_RS04850 (NSS81_04850) - 908924..909115 (-) 192 WP_342432411.1 hypothetical protein -
  NSS81_RS04855 (NSS81_04855) - 909128..909601 (-) 474 WP_342432412.1 PRC-barrel domain-containing protein -
  NSS81_RS04860 (NSS81_04860) recD2 909635..912049 (-) 2415 WP_342432413.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSS81_RS04865 (NSS81_04865) - 912083..912736 (-) 654 WP_342432414.1 tetratricopeptide repeat protein -
  NSS81_RS04870 (NSS81_04870) mnmA 912844..913962 (-) 1119 WP_342433940.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSS81_RS04875 (NSS81_04875) - 914001..915143 (-) 1143 WP_342432415.1 cysteine desulfurase family protein -
  NSS81_RS04880 (NSS81_04880) - 915189..915608 (-) 420 WP_342432416.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 804 a.a.        Molecular weight: 90877.97 Da        Isoelectric Point: 4.8925

>NTDB_id=981518 NSS81_RS04860 WP_342432413.1 909635..912049(-) (recD2) [Neobacillus sp. FSL H8-0543]
MVKQDSLDLFEEQGKFVRGRHLVTIFHNEQNLYTVLRIRVEETNDQYEDKEAVITGYFPKIHEQETYTFFGEFKDHPKFG
MQFQVQHFRKEIPQTKQGVITYLSSEMFKGIGKKTAESIVETLGENAISKILAQPSLLDSIPRLPPEKAKMLYDTLMDHQ
GLEQVMVALNQYGFGPQISMRIYQAYKDNTLEIIQKNPYKLVEDIEGIGFGRADELGYQLGISGSHPDRIKAACLYTLES
ESMQTGHVFIQAEDLLVQVKELLEGNKRDQIEFLEISNELIKLQEEGKVIGEEQRVYLPSLYFAEKGLVTSINRILEQKE
YKEQFPESEFLLALGSLEERINVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLELKDYQKKD
EPFPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGFNGTEEFDHSEASPLEGKIIIVDETSMLDIWLANQLFRALPENIQV
ILVGDEDQLPSVGPGQVLKDLLMSERVPTVRLTDIYRQAEGSSIIELAHEIKKGLLPADITEKQKDRSFIRCSGAQIPQV
VEKVALNAKTKGYTAKDIQVLAPMYRGPAGIDRLNVILQEIFNPNPDGTRKEIAFGDVKYRIGDKVLQLVNQPESNVFNG
DIGEIVSIFYAKENTEKQDMVLISFEGNEVTYSKQDLNQITHAYCCSVHKSQGSEFPIVILPLTRSYYRMLRRNLIYTAI
TRSKQSLILCGEVDAFRMGVERADEQSRLTTLRQKLQETISLTQPNDDKEDIAIGTLSAEERLMQVNPMIGMENLTPYDF
MANG

Nucleotide


Download         Length: 2415 bp        

>NTDB_id=981518 NSS81_RS04860 WP_342432413.1 909635..912049(-) (recD2) [Neobacillus sp. FSL H8-0543]
ATGGTAAAACAGGACTCACTCGATTTATTTGAAGAGCAAGGTAAGTTTGTGAGGGGAAGGCATCTGGTAACAATTTTTCA
TAATGAGCAAAATCTGTACACCGTATTACGAATCCGTGTGGAAGAAACGAATGATCAATATGAAGATAAAGAAGCAGTGA
TAACAGGCTATTTTCCTAAGATCCATGAACAGGAAACTTACACTTTCTTCGGCGAATTTAAAGACCATCCAAAATTTGGG
ATGCAGTTTCAAGTCCAACACTTTCGCAAAGAAATCCCACAGACAAAACAAGGCGTTATCACCTATTTATCAAGTGAGAT
GTTTAAAGGAATTGGGAAGAAGACAGCAGAAAGTATTGTTGAAACATTAGGTGAAAATGCTATTTCAAAAATTCTTGCGC
AGCCATCTTTACTAGATTCGATTCCAAGGCTTCCTCCTGAAAAGGCGAAGATGCTCTATGATACCTTAATGGACCATCAA
GGCCTCGAGCAGGTAATGGTCGCATTAAATCAGTATGGATTTGGTCCGCAAATATCAATGAGAATTTATCAGGCCTATAA
GGACAACACACTTGAAATCATTCAAAAAAATCCCTACAAGCTTGTTGAGGATATCGAAGGAATAGGTTTTGGACGAGCTG
ATGAGCTTGGATATCAGCTCGGAATCTCAGGGAGTCATCCAGACCGGATTAAAGCAGCCTGCCTTTATACACTCGAGAGT
GAAAGCATGCAGACGGGGCATGTTTTTATTCAAGCAGAGGATTTACTTGTACAGGTTAAAGAACTTCTTGAGGGGAATAA
GAGAGATCAGATTGAGTTTTTAGAAATCTCTAACGAGCTAATTAAGCTTCAGGAAGAAGGCAAGGTAATTGGCGAAGAGC
AAAGGGTATATTTACCTTCCTTGTATTTCGCTGAAAAAGGACTTGTTACAAGCATTAACCGCATTTTAGAGCAAAAGGAA
TATAAAGAACAATTTCCGGAATCAGAATTTCTACTTGCTTTAGGAAGCCTTGAAGAACGAATAAATGTTCAATATGCACC
AACCCAAAAGGAAGCTATCCAAACAGCGTTAATGTCGCCAATGTTGATTTTAACTGGTGGTCCTGGAACAGGAAAAACTA
CTGTTATCAAAGGAATTGTTGAACTCTATGCTGAACTGCATGGCTGTTCATTAGAGCTCAAGGATTATCAGAAAAAAGAT
GAACCGTTTCCGTTTTTACTCGCTGCTCCAACAGGCAGGGCTGCAAAAAGAATGAGTGAATCGACAGGACTTCCTGCTGT
CACAATCCATCGTTTACTCGGATTTAATGGGACAGAAGAATTTGACCATAGCGAAGCAAGTCCGCTAGAAGGGAAAATCA
TCATTGTTGATGAAACTTCTATGCTTGATATCTGGTTAGCAAATCAATTGTTTAGGGCACTGCCTGAAAACATTCAAGTA
ATCCTTGTTGGTGATGAAGACCAGTTGCCATCGGTAGGTCCTGGTCAAGTATTAAAGGACTTGTTAATGTCCGAACGTGT
TCCGACGGTAAGATTAACCGATATTTACCGGCAAGCGGAAGGCTCATCTATCATTGAATTGGCACATGAAATTAAAAAGG
GCTTATTACCTGCTGATATTACAGAAAAACAGAAGGATCGGTCTTTTATTAGATGTTCTGGAGCACAAATTCCTCAAGTG
GTGGAAAAAGTAGCGTTAAACGCGAAAACGAAAGGATATACTGCAAAGGATATTCAGGTGCTGGCACCGATGTATAGAGG
TCCAGCTGGCATTGACCGCTTAAATGTAATATTGCAGGAAATCTTTAATCCTAACCCTGATGGGACTCGGAAAGAAATTG
CATTTGGTGATGTAAAATATCGCATAGGCGATAAGGTGCTCCAGTTAGTGAATCAGCCTGAAAGCAATGTCTTTAATGGT
GACATCGGTGAGATTGTTTCGATTTTTTATGCTAAGGAAAATACCGAAAAACAAGACATGGTTCTGATTTCTTTTGAAGG
AAATGAAGTAACCTATTCAAAACAGGATTTGAATCAAATCACTCATGCCTATTGCTGTTCTGTACATAAGTCCCAAGGCA
GTGAATTTCCAATTGTTATCCTTCCGCTTACTAGAAGCTATTACCGAATGTTAAGGAGAAATCTTATTTATACAGCCATC
ACAAGAAGTAAACAATCATTAATTTTGTGCGGGGAAGTGGATGCTTTCCGAATGGGAGTGGAAAGGGCGGATGAGCAAAG
TCGGCTAACGACACTACGCCAAAAGCTCCAGGAAACAATTTCACTCACCCAGCCAAATGATGACAAAGAGGATATTGCAA
TTGGTACTCTATCCGCTGAAGAGAGGTTGATGCAAGTTAATCCAATGATTGGCATGGAAAACCTTACACCTTATGATTTC
ATGGCAAATGGCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

AAA domain (AAA_30)

(345-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.078

99.378

0.617

Multiple sequence alignment