Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAFX31_RS16130 Genome accession   NZ_CP151941
Coordinates   1718040..1718753 (-) Length   237 a.a.
NCBI ID   WP_171730403.1    Uniprot ID   -
Organism   Vibrio chagasii strain TBV018     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1713040..1723753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX31_RS16105 (AAFX31_16120) - 1714253..1714741 (+) 489 WP_411062244.1 type II secretion system protein M -
  AAFX31_RS16110 (AAFX31_16125) - 1714743..1715522 (+) 780 WP_081090347.1 type II secretion system protein N -
  AAFX31_RS16115 (AAFX31_16130) cysQ 1715642..1716469 (-) 828 WP_004741451.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AAFX31_RS16120 (AAFX31_16135) nudE 1716505..1717056 (-) 552 WP_061033119.1 ADP compounds hydrolase NudE -
  AAFX31_RS16125 (AAFX31_16140) nfuA 1717346..1717930 (-) 585 WP_004741449.1 Fe-S biogenesis protein NfuA -
  AAFX31_RS16130 (AAFX31_16145) comF 1718040..1718753 (-) 714 WP_171730403.1 ComF family protein Machinery gene
  AAFX31_RS16135 (AAFX31_16150) bioH 1718847..1719623 (+) 777 WP_186171434.1 pimeloyl-ACP methyl ester esterase BioH -
  AAFX31_RS16140 (AAFX31_16155) - 1719876..1720349 (+) 474 WP_061033121.1 hypothetical protein -
  AAFX31_RS16145 (AAFX31_16160) - 1720476..1722806 (-) 2331 WP_411062245.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27069.32 Da        Isoelectric Point: 8.8701

>NTDB_id=981420 AAFX31_RS16130 WP_171730403.1 1718040..1718753(-) (comF) [Vibrio chagasii strain TBV018]
MLSDWLQKHTPRLVTPQCHLCKLDKQPNDHHPRWCDSCLKLFELVPRCQRCGLKTVTAVEQCGECLAAPPPWHRLYCVGD
YTFPTAGYIQQMKYADKFWFARDLSTLLASRIEEPASLVTSVPLHWRRYFHRGFNQSQLLARYTAQDLKVEHAVLFKRIR
STGSQQGLTKSARKSNLKGAFAMKNTSFSAMDYSHVAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=981420 AAFX31_RS16130 WP_171730403.1 1718040..1718753(-) (comF) [Vibrio chagasii strain TBV018]
ATGTTATCCGATTGGCTACAAAAACACACACCACGTCTGGTCACACCTCAATGTCACCTCTGCAAGCTAGATAAACAGCC
TAATGATCACCACCCTCGATGGTGTGATAGTTGCCTAAAACTGTTCGAGCTCGTGCCTCGCTGTCAAAGGTGCGGACTGA
AAACGGTCACAGCCGTCGAGCAATGCGGTGAGTGCTTGGCTGCCCCACCCCCTTGGCATCGGCTCTATTGTGTTGGTGAT
TACACCTTTCCAACCGCAGGCTATATCCAACAGATGAAGTATGCCGATAAATTCTGGTTTGCTCGAGATTTGTCGACCTT
GCTCGCGTCACGCATCGAAGAACCAGCATCTCTCGTCACCAGTGTTCCCTTACATTGGCGTCGATACTTTCATCGTGGTT
TTAATCAAAGTCAGCTACTGGCGCGTTACACCGCTCAAGACCTCAAGGTGGAGCATGCCGTTTTATTCAAGCGCATCCGT
TCAACCGGTTCGCAGCAAGGGCTAACTAAATCAGCCAGAAAAAGTAACTTGAAAGGTGCATTCGCGATGAAAAACACCAG
CTTCTCAGCGATGGATTACTCGCATGTCGCGATAATTGATGATGTTGTAACCACAGGCAGTACTGTGTATCAATTATGCC
AATTATTACTTGAAGTAGGGGTGAAAAGGATTGATATTTACTGCATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

54.661

99.578

0.544
  comF Vibrio campbellii strain DS40M4

50

100

0.515

Multiple sequence alignment