Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAFX34_RS22335 Genome accession   NZ_CP151937
Coordinates   3202370..3203080 (+) Length   236 a.a.
NCBI ID   WP_044023954.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3197370..3208080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS22315 (AAFX34_22870) greB 3197781..3198263 (-) 483 WP_013572566.1 transcription elongation factor GreB -
  AAFX34_RS22320 (AAFX34_22875) - 3198499..3200823 (+) 2325 WP_072614809.1 Tex family protein -
  AAFX34_RS22325 (AAFX34_22880) - 3200906..3201376 (-) 471 WP_039552251.1 hypothetical protein -
  AAFX34_RS22330 (AAFX34_22885) bioH 3201514..3202281 (-) 768 WP_013572568.1 pimeloyl-ACP methyl ester esterase BioH -
  AAFX34_RS22335 (AAFX34_22890) comF 3202370..3203080 (+) 711 WP_044023954.1 ComF family protein Machinery gene
  AAFX34_RS22340 (AAFX34_22895) nfuA 3203211..3203795 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  AAFX34_RS22345 (AAFX34_22900) nudE 3203911..3204465 (+) 555 WP_013572571.1 ADP compounds hydrolase NudE -
  AAFX34_RS22350 (AAFX34_22905) cysQ 3204480..3205307 (+) 828 WP_045623813.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AAFX34_RS22355 (AAFX34_22910) - 3205433..3206194 (-) 762 WP_011078934.1 type II secretion system protein N -
  AAFX34_RS22360 (AAFX34_22915) - 3206196..3206687 (-) 492 WP_011078935.1 type II secretion system protein M -
  AAFX34_RS22365 (AAFX34_22920) gspL 3206695..3207894 (-) 1200 WP_043920924.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27261.06 Da        Isoelectric Point: 9.7910

>NTDB_id=981339 AAFX34_RS22335 WP_044023954.1 3202370..3203080(+) (comF) [Vibrio vulnificus strain TBV029]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCLHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPYAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=981339 AAFX34_RS22335 WP_044023954.1 3202370..3203080(+) (comF) [Vibrio vulnificus strain TBV029]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCTGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCACAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTATTGCCTCACGCCGTAT
CGCTTTCCAGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGCCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TTTACCCTATGCGATTCCCAAGCACGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment