Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACNFKJ_RS13290 Genome accession   NZ_CP182514
Coordinates   2669767..2670540 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain subspecie aureus F-182     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2664767..2675540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKJ_RS13270 trmFO 2665110..2666417 (+) 1308 WP_000195249.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  ACNFKJ_RS13275 xerC 2666835..2667731 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  ACNFKJ_RS13280 hslV 2667728..2668273 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  ACNFKJ_RS13285 hslU 2668339..2669742 (+) 1404 WP_102695906.1 ATP-dependent protease ATPase subunit HslU -
  ACNFKJ_RS13290 codY 2669767..2670540 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACNFKJ_RS13295 - 2670591..2670683 (+) 93 WP_031788481.1 hypothetical protein -
  ACNFKJ_RS13300 rpsB 2670882..2671649 (+) 768 WP_102695907.1 30S ribosomal protein S2 -
  ACNFKJ_RS13305 - 2671683..2671796 (+) 114 WP_001791405.1 hypothetical protein -
  ACNFKJ_RS13310 tsf 2671831..2672712 (+) 882 WP_000201387.1 translation elongation factor Ts -
  ACNFKJ_RS13315 pyrH 2672849..2673571 (+) 723 WP_000057330.1 UMP kinase -
  ACNFKJ_RS13320 frr 2673590..2674144 (+) 555 WP_001280006.1 ribosome recycling factor -
  ACNFKJ_RS13325 - 2674517..2675287 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=981292 ACNFKJ_RS13290 WP_000055337.1 2669767..2670540(+) (codY) [Staphylococcus aureus strain subspecie aureus F-182]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=981292 ACNFKJ_RS13290 WP_000055337.1 2669767..2670540(+) (codY) [Staphylococcus aureus strain subspecie aureus F-182]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGCGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACACGATG
ACTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428