Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABXG87_RS08225 Genome accession   NZ_AP031488
Coordinates   1755872..1756657 (-) Length   261 a.a.
NCBI ID   WP_045772004.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1750872..1761657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS08200 (Ssa13956_15580) - 1751976..1752590 (-) 615 WP_353552066.1 GyrI-like domain-containing protein -
  ABXG87_RS08205 (Ssa13956_15590) - 1752653..1753552 (-) 900 WP_353551452.1 YafY family protein -
  ABXG87_RS08210 (Ssa13956_15600) - 1753921..1754682 (+) 762 WP_111686594.1 IS110 family transposase -
  ABXG87_RS08215 (Ssa13956_15610) - 1754702..1755088 (+) 387 WP_045768432.1 IS110 family transposase -
  ABXG87_RS08220 (Ssa13956_15620) - 1755255..1755806 (-) 552 WP_004183314.1 isochorismatase family cysteine hydrolase -
  ABXG87_RS08225 (Ssa13956_15630) codY 1755872..1756657 (-) 786 WP_045772004.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABXG87_RS08230 (Ssa13956_15640) - 1756925..1758139 (-) 1215 WP_013991094.1 pyridoxal phosphate-dependent aminotransferase -
  ABXG87_RS08235 (Ssa13956_15650) - 1758499..1758951 (+) 453 WP_002891687.1 universal stress protein -
  ABXG87_RS08240 (Ssa13956_15660) - 1759033..1759785 (-) 753 WP_045772005.1 hypothetical protein -
  ABXG87_RS08245 (Ssa13956_15670) pflA 1759855..1760655 (-) 801 WP_013991096.1 pyruvate formate-lyase-activating protein -
  ABXG87_RS08250 (Ssa13956_15680) - 1760842..1761564 (-) 723 WP_353551454.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28816.85 Da        Isoelectric Point: 4.3715

>NTDB_id=98122 ABXG87_RS08225 WP_045772004.1 1755872..1756657(-) (codY) [Streptococcus salivarius strain NBRC 13956]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNTDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=98122 ABXG87_RS08225 WP_045772004.1 1755872..1756657(-) (codY) [Streptococcus salivarius strain NBRC 13956]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGATAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTTCTTG
GTTTTGCCATGAAGTACAAAACCAACACTGATCGTGTGGAAGAGTTTTTTGAAGCCAAACAACTTCCAGAAGAATACACA
CGTGGTATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGACTTGACCATTTTCCCTGTGGAGTCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCACCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGATCATGACTTTGTAGATGAAGATCTTATCTTGGTTGAAATTGCCTCTACAGTAGTTGGGTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TTGGAATTACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.591

98.467

0.636
  codY Bacillus subtilis subsp. subtilis str. 168

52.632

94.636

0.498

Multiple sequence alignment