Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   WFZ83_RS05290 Genome accession   NZ_CP151867
Coordinates   967874..968653 (+) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus thuringiensis strain YB6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 962874..973653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFZ83_RS05270 trmFO 963528..964832 (+) 1305 WP_003295032.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  WFZ83_RS05275 xerC 964898..965797 (+) 900 WP_001101227.1 tyrosine recombinase XerC -
  WFZ83_RS05280 hslV 965840..966382 (+) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  WFZ83_RS05285 hslU 966405..967796 (+) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  WFZ83_RS05290 codY 967874..968653 (+) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  WFZ83_RS05295 rpsB 969005..969706 (+) 702 WP_000111483.1 30S ribosomal protein S2 -
  WFZ83_RS05300 tsf 969810..970697 (+) 888 WP_342378980.1 translation elongation factor Ts -
  WFZ83_RS05305 pyrH 970764..971486 (+) 723 WP_000042663.1 UMP kinase -
  WFZ83_RS05310 frr 971489..972046 (+) 558 WP_000531503.1 ribosome recycling factor -
  WFZ83_RS05315 uppS 972132..972908 (+) 777 WP_000971301.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=981139 WFZ83_RS05290 WP_000421288.1 967874..968653(+) (codY) [Bacillus thuringiensis strain YB6]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=981139 WFZ83_RS05290 WP_000421288.1 967874..968653(+) (codY) [Bacillus thuringiensis strain YB6]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment