Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABXG87_RS07250 Genome accession   NZ_AP031488
Coordinates   1558259..1559995 (-) Length   578 a.a.
NCBI ID   WP_353551360.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1553259..1564995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS07230 (Ssa13956_13620) - 1553292..1554275 (-) 984 WP_002889116.1 rhodanese-related sulfurtransferase -
  ABXG87_RS07235 (Ssa13956_13630) - 1554465..1555166 (-) 702 WP_049545936.1 glucosamine-6-phosphate deaminase -
  ABXG87_RS07240 (Ssa13956_13640) queA 1555319..1556362 (+) 1044 WP_353551359.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ABXG87_RS07245 (Ssa13956_13650) rcrQ 1556459..1558246 (-) 1788 WP_270316314.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS07250 (Ssa13956_13660) rcrP 1558259..1559995 (-) 1737 WP_353551360.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS07255 (Ssa13956_13670) - 1560197..1560568 (-) 372 WP_045769005.1 type II toxin-antitoxin system death-on-curing family toxin -
  ABXG87_RS07260 (Ssa13956_13680) - 1560565..1560822 (-) 258 WP_045769006.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  ABXG87_RS07265 (Ssa13956_13690) - 1561149..1562398 (+) 1250 Protein_1378 ISL3 family transposase -
  ABXG87_RS07270 (Ssa13956_13700) rplL 1562535..1562903 (-) 369 WP_037613517.1 50S ribosomal protein L7/L12 -
  ABXG87_RS07275 (Ssa13956_13710) rplJ 1562979..1563482 (-) 504 WP_004183007.1 50S ribosomal protein L10 -
  ABXG87_RS07280 (Ssa13956_13720) - 1563774..1564982 (-) 1209 WP_049554175.1 ABC transporter permease -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64763.71 Da        Isoelectric Point: 5.7817

>NTDB_id=98113 ABXG87_RS07250 WP_353551360.1 1558259..1559995(-) (rcrP) [Streptococcus salivarius strain NBRC 13956]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLAKMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLSYAVSKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFAEQILKMGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGSLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
GGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIDSKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMESNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=98113 ABXG87_RS07250 WP_353551360.1 1558259..1559995(-) (rcrP) [Streptococcus salivarius strain NBRC 13956]
ATGGCTTATATTTGGTCTTATCTTAGGCGTTATCCTAAGTGGCTAGCAATGAATTTTACGGCGGCTATTTTATTTGTTAT
TGCTAACTTAGGTCTGCCGACGGTTCTTGCCAAAATGATTGATGAGGGGATTAACCGTGGAGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTCGGTGTGGTCTTGACTGGGATTGTTGGTCGTGTGCTCTTGTCCTATGCGGTTAGTAAATTG
ACGACCACAATGGTGCAGGTCATGCGTAATGACATTTACGCTAAGCTTCAGGAGTATTCCCACCATGAGTACGAGCAGAT
TGGCGTATCCTCTTTGGTAACTCGTATTACATCTGATGCTTTTGTTCTCATGCAATTTGCAGAACAGATTCTTAAGATGG
GTGTCATTACTCCTCTGATGATGGTTTCCAGTGTCTTCTTAATTTTGACGACAAGTCCGTCTTTGGCTTGGATTGTGGCA
ATTTCCTTGCCTTTCCTAGCCGTAGTAGTCTGGTATGTAGCGGTAAAAACACGTCCGCTTTCTGAGAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTACGCTCGTGAAAATCTAACTGGACTTCGTGTCATCCGAGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTTGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAGCTCTTTAAATTAACTGGTTTGACTGAG
CCACTTTTTGTGCAAATCATCATCGCCATGATTGTGGCAATTGTTTGGTTTGCCCTTGAGCCATTAGGTTCTGGGAGTTT
GGCAATCGGGGATTTGGTTGCCTTTATTGAGTACAGTTTCCATGCGCTATTGTCTTTCCTTTTCCTAGCCAACCTCTTTA
CCATGTATCCTCGTACGGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGATATGCCTATTTCTATCAATCCAAATGAA
GGTGGAGTGACAGAGACTGAGACTAAGGGATATTTGGAGTTTGACAACGTGACCTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTCCTACACAATATTTCCTTTAAGGCTAAACCAGGTGAAACCATTGCCTTTATCGGATCTACGGGTTCAGGAAAAT
CATCACTTGTGCAGTTGATTCCACGCTTTTATGATGTGACACTTGGACGCATTCTTGTTGATGGTGTGGATGTTCGTGAC
TATAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTGCTCTTTACAGGAACCATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACGGATGTCGCTCAGGCCAAGGAATTTATCG
ATAGTAAGGAAGAACGCTACGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCACGAGCGGTGGTTAAACGTCCCGACCTTTACATCTTTGACGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGTCGTCGTCTGAAAGAAGTGACCCAAGATGCGACAGTCTTGATTGTGGCTCAACGTGTGGGTACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTGGGTCGAGGCCGTCACGAAGAGCTTATGGAAAGCAATGAG
ATTTACCGTGAAATTGCTAACTCTCAATTGAACCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.962

92.215

0.369

Multiple sequence alignment