Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAGA51_RS00795 Genome accession   NZ_CP151842
Coordinates   173667..174398 (-) Length   243 a.a.
NCBI ID   WP_042484852.1    Uniprot ID   A0A2J8I2I1
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 168667..179398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS00765 gspL 168857..170068 (+) 1212 WP_042484842.1 type II secretion system protein GspL -
  AAGA51_RS00770 - 170078..170587 (+) 510 WP_042484844.1 type II secretion system protein M -
  AAGA51_RS00775 - 170589..171347 (+) 759 WP_042484845.1 type II secretion system protein N -
  AAGA51_RS00780 cysQ 171426..172247 (-) 822 WP_042484848.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AAGA51_RS00785 nudE 172274..172816 (-) 543 WP_042484849.1 ADP compounds hydrolase NudE -
  AAGA51_RS00790 nfuA 172981..173565 (-) 585 WP_042485419.1 Fe-S biogenesis protein NfuA -
  AAGA51_RS00795 comF 173667..174398 (-) 732 WP_042484852.1 ComF family protein Machinery gene
  AAGA51_RS00800 bioH 174483..175250 (+) 768 WP_042484855.1 pimeloyl-ACP methyl ester esterase BioH -
  AAGA51_RS00805 - 175399..175869 (+) 471 WP_042484858.1 hypothetical protein -
  AAGA51_RS00810 - 175987..178362 (-) 2376 WP_042484862.1 Tex family protein -
  AAGA51_RS00815 greB 178464..178940 (-) 477 WP_042484864.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27889.33 Da        Isoelectric Point: 8.8279

>NTDB_id=981069 AAGA51_RS00795 WP_042484852.1 173667..174398(-) (comF) [Vibrio diazotrophicus strain ATCC 33466]
MLSDWFQKATLLKFKSKTAHWLFPQCPICKLPLNNEDPYGVCSACEVWYASTPRCQRCGLATLTPVDMCGQCLSKPPPWH
RLYCIGDYQFPLSNSIHQLKYQRQFWQAQPLAKRLSECIDTPAPVITSVPLHWQRYLRRGFNQSDLIAKHLAAYLGVKHQ
TKLFCRELNTQSQQGLSKAQRKRNLTKAFRLNAHPNSLHVGIVDDVVTTGSTVQHLCQLLLEVGVERIDIYCICRTPEPE
DHK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=981069 AAGA51_RS00795 WP_042484852.1 173667..174398(-) (comF) [Vibrio diazotrophicus strain ATCC 33466]
ATGTTATCCGATTGGTTTCAAAAAGCTACGCTGTTGAAATTCAAGAGCAAGACCGCCCATTGGCTATTTCCGCAATGCCC
CATTTGTAAGTTGCCATTAAATAACGAAGATCCTTACGGTGTGTGTTCTGCCTGTGAGGTTTGGTATGCCTCTACACCTC
GCTGCCAACGTTGCGGTTTAGCGACGCTGACACCCGTAGACATGTGTGGTCAATGCCTTTCAAAACCACCACCTTGGCAC
AGATTGTATTGTATCGGTGATTATCAGTTCCCGTTAAGCAATAGTATCCATCAGCTCAAATATCAGCGTCAGTTCTGGCA
AGCGCAACCGCTCGCGAAACGTCTCTCAGAATGTATTGATACTCCGGCTCCCGTGATAACCAGTGTCCCCTTGCATTGGC
AGCGATATCTGCGCAGAGGGTTTAATCAAAGTGACCTGATTGCCAAACACTTGGCAGCATATCTGGGAGTTAAACATCAA
ACGAAACTGTTTTGCCGAGAACTCAACACCCAATCACAGCAGGGACTAAGCAAGGCTCAACGTAAACGTAATTTAACTAA
AGCCTTTCGTCTCAACGCTCATCCCAACAGCCTTCATGTTGGAATCGTAGACGATGTTGTCACCACAGGGAGTACTGTGC
AGCATTTATGTCAACTGCTACTTGAAGTGGGCGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCAGAGCCAGAA
GATCATAAGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(168-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J8I2I1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.581

99.177

0.601
  comF Vibrio campbellii strain DS40M4

50.667

92.593

0.469

Multiple sequence alignment