Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | AAEU33_RS08970 | Genome accession | NZ_CP151793 |
| Coordinates | 1952098..1952748 (-) | Length | 216 a.a. |
| NCBI ID | WP_345992154.1 | Uniprot ID | - |
| Organism | Chryseobacterium sp. Chry.R1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1947098..1957748
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAEU33_RS08960 (AAEU33_08960) | upp | 1950681..1951331 (+) | 651 | WP_172280240.1 | uracil phosphoribosyltransferase | - |
| AAEU33_RS08965 (AAEU33_08965) | - | 1951332..1952021 (-) | 690 | WP_345992152.1 | alpha/beta hydrolase | - |
| AAEU33_RS08970 (AAEU33_08970) | comF | 1952098..1952748 (-) | 651 | WP_345992154.1 | double zinc ribbon domain-containing protein | Machinery gene |
| AAEU33_RS08975 (AAEU33_08975) | - | 1952826..1954310 (-) | 1485 | WP_172280235.1 | helix-turn-helix transcriptional regulator | - |
| AAEU33_RS08980 (AAEU33_08980) | aceB | 1954438..1956012 (+) | 1575 | WP_345992156.1 | malate synthase A | - |
| AAEU33_RS08985 (AAEU33_08985) | aceA | 1956208..1957491 (+) | 1284 | WP_345992758.1 | isocitrate lyase | - |
Sequence
Protein
Download Length: 216 a.a. Molecular weight: 25521.48 Da Isoelectric Point: 8.6025
>NTDB_id=980897 AAEU33_RS08970 WP_345992154.1 1952098..1952748(-) (comF) [Chryseobacterium sp. Chry.R1]
MILDLLFPNRCIHCNRIIDADLLVCSSCFEHIHFTHFNYFEDNLFKEKCKLLFPVENAYALMYFEEENLSRKIIHELKYK
NREKTGKVIANWTIGRLDFKNNKPDLLVSVPLHPKKERERGYNQLHLFTEILSSQYHIPFDHHLIKRNYYSQAQALKDKK
HRLKNDNTFSISRKISDKHILLIDDVFTTGNTIATIAWEILNSGNNKVSILVMTID
MILDLLFPNRCIHCNRIIDADLLVCSSCFEHIHFTHFNYFEDNLFKEKCKLLFPVENAYALMYFEEENLSRKIIHELKYK
NREKTGKVIANWTIGRLDFKNNKPDLLVSVPLHPKKERERGYNQLHLFTEILSSQYHIPFDHHLIKRNYYSQAQALKDKK
HRLKNDNTFSISRKISDKHILLIDDVFTTGNTIATIAWEILNSGNNKVSILVMTID
Nucleotide
Download Length: 651 bp
>NTDB_id=980897 AAEU33_RS08970 WP_345992154.1 1952098..1952748(-) (comF) [Chryseobacterium sp. Chry.R1]
ATGATTCTTGACCTTCTTTTCCCCAATCGTTGCATCCACTGCAACCGGATCATCGATGCTGACCTTCTGGTATGCTCCTC
CTGTTTTGAACATATCCACTTTACCCATTTCAATTATTTTGAAGATAACCTGTTTAAAGAAAAGTGCAAATTATTGTTTC
CGGTTGAAAACGCATATGCGCTCATGTATTTTGAGGAGGAAAACTTAAGCCGTAAGATCATCCACGAATTAAAATATAAA
AACCGGGAAAAAACCGGGAAAGTGATTGCAAACTGGACAATCGGGAGACTGGATTTTAAAAATAACAAACCTGATTTACT
GGTAAGCGTTCCACTTCATCCTAAAAAAGAAAGAGAAAGAGGATATAATCAATTGCATCTGTTTACAGAAATACTATCCA
GCCAATATCATATTCCATTTGACCATCACCTGATCAAAAGAAATTACTACTCACAAGCTCAGGCCCTAAAAGATAAAAAA
CATCGCCTAAAAAATGACAACACTTTTTCAATATCCCGAAAGATATCTGATAAACATATTTTATTAATTGATGACGTTTT
TACCACCGGCAATACGATCGCAACTATAGCATGGGAAATCTTAAATAGCGGCAATAATAAAGTGAGCATTCTGGTAATGA
CAATAGATTAA
ATGATTCTTGACCTTCTTTTCCCCAATCGTTGCATCCACTGCAACCGGATCATCGATGCTGACCTTCTGGTATGCTCCTC
CTGTTTTGAACATATCCACTTTACCCATTTCAATTATTTTGAAGATAACCTGTTTAAAGAAAAGTGCAAATTATTGTTTC
CGGTTGAAAACGCATATGCGCTCATGTATTTTGAGGAGGAAAACTTAAGCCGTAAGATCATCCACGAATTAAAATATAAA
AACCGGGAAAAAACCGGGAAAGTGATTGCAAACTGGACAATCGGGAGACTGGATTTTAAAAATAACAAACCTGATTTACT
GGTAAGCGTTCCACTTCATCCTAAAAAAGAAAGAGAAAGAGGATATAATCAATTGCATCTGTTTACAGAAATACTATCCA
GCCAATATCATATTCCATTTGACCATCACCTGATCAAAAGAAATTACTACTCACAAGCTCAGGCCCTAAAAGATAAAAAA
CATCGCCTAAAAAATGACAACACTTTTTCAATATCCCGAAAGATATCTGATAAACATATTTTATTAATTGATGACGTTTT
TACCACCGGCAATACGATCGCAACTATAGCATGGGAAATCTTAAATAGCGGCAATAATAAAGTGAGCATTCTGGTAATGA
CAATAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
51.389 |
100 |
0.514 |