Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABXG87_RS04025 Genome accession   NZ_AP031488
Coordinates   890142..891890 (+) Length   582 a.a.
NCBI ID   WP_014633025.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 885142..896890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS04005 (Ssa13956_07340) glyA 885535..886785 (+) 1251 WP_021144018.1 serine hydroxymethyltransferase -
  ABXG87_RS04010 (Ssa13956_07350) - 886791..887768 (+) 978 WP_004182031.1 nucleoid-associated protein -
  ABXG87_RS04015 (Ssa13956_07360) - 887770..888381 (+) 612 WP_037611402.1 lysozyme family protein -
  ABXG87_RS04020 (Ssa13956_07370) - 888413..890152 (+) 1740 WP_045772375.1 ABC transporter ATP-binding protein -
  ABXG87_RS04025 (Ssa13956_07380) rcrQ 890142..891890 (+) 1749 WP_014633025.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS04030 - 892067..892198 (+) 132 WP_002885174.1 teichoic acid D-Ala incorporation-associated protein DltX -
  ABXG87_RS04035 (Ssa13956_07390) dltA 892207..893757 (+) 1551 WP_014633026.1 D-alanine--poly(phosphoribitol) ligase subunit DltA -
  ABXG87_RS04040 (Ssa13956_07400) dltB 893754..895001 (+) 1248 WP_014633027.1 D-alanyl-lipoteichoic acid biosynthesis protein DltB -
  ABXG87_RS04045 (Ssa13956_07410) dltC 895019..895258 (+) 240 WP_002891149.1 D-alanine--poly(phosphoribitol) ligase subunit DltC -
  ABXG87_RS04050 (Ssa13956_07420) dltD 895251..896519 (+) 1269 WP_013990453.1 D-alanyl-lipoteichoic acid biosynthesis protein DltD -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65479.05 Da        Isoelectric Point: 7.9783

>NTDB_id=98087 ABXG87_RS04025 WP_014633025.1 890142..891890(+) (rcrQ) [Streptococcus salivarius strain NBRC 13956]
MKARNNKSTLKRLSRDILSQRYLFALATVGTIIQVALTVYLPILIGDAVDAVLKMNAVLLMSRLIWQMLVVILANSAIQW
LNPLIYNRLIYSYSESLRERVMMKIHAMPLSYLDRQGTGDMVSRVTTDSDQLNNGLLMVFNQFFVGLLTIFVIIITMARL
DWFMMLLVLVMTPLSMLVARFIAKKSYQLYRNQTKWRGMQTQLIEESLTQEALVQSLNAQDQMVRSFKDVNGKYADYSQG
AIFYSSAVNPATRFVNSLIYALIAGVGAYRIMSGGAFTVGQLTTFLNYVTQYTKPFNDISSVLSELQSALACADRLYMIL
DEEEITETGKVVLEEADVQGRFQFDHVQFGYLPNKPLIKDLSIDIPVASTVAIVGPTGAGKSTLINLLMRFYDLDKGNIL
LDGRPITDYTRESLRKQIGMVLQETWLEVGTIHDNIAYGNPEASREEVIAAAKAANADFFIKQLPQGYDTYLNDAGQSLS
QGQRQLLTIARIFVNVPKILILDEATSSIDTRTELLIQEAFAKLMKGRTSFIIAHRLSTIENADLILVMNNGDIVEHGTH
ERLMQAKGMYYRMQTAQKTQNS

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=98087 ABXG87_RS04025 WP_014633025.1 890142..891890(+) (rcrQ) [Streptococcus salivarius strain NBRC 13956]
ATGAAGGCTAGAAATAATAAATCAACGCTTAAACGTTTAAGTAGAGATATCTTAAGTCAGCGCTACCTCTTTGCCTTAGC
AACTGTTGGGACCATTATTCAAGTTGCCTTAACGGTTTACTTACCTATCTTAATTGGTGATGCAGTGGACGCTGTTCTTA
AGATGAACGCCGTTTTATTGATGTCACGTTTAATTTGGCAGATGCTTGTAGTTATCTTAGCTAATAGTGCAATCCAGTGG
CTTAACCCTTTGATTTATAATCGATTAATTTATTCATATAGCGAAAGTTTACGTGAACGAGTCATGATGAAAATTCATGC
TATGCCTCTCAGTTACCTTGATCGTCAAGGAACTGGAGACATGGTTAGCCGTGTGACTACAGATAGTGATCAATTAAACA
ACGGACTTCTCATGGTCTTTAACCAATTTTTCGTTGGGCTTTTGACTATCTTTGTCATAATCATTACCATGGCTCGCTTA
GACTGGTTCATGATGCTATTAGTTCTAGTGATGACGCCTTTGTCAATGCTTGTGGCACGTTTTATCGCAAAGAAGAGCTA
CCAACTCTATCGCAATCAAACTAAATGGAGAGGCATGCAGACTCAGTTGATTGAAGAAAGTTTGACTCAAGAAGCTTTAG
TACAGAGTTTAAATGCTCAAGACCAGATGGTTAGGAGTTTTAAAGACGTTAATGGTAAGTATGCCGATTATTCACAGGGC
GCTATCTTTTATTCGTCAGCAGTTAACCCAGCTACACGTTTTGTCAATAGTCTGATCTATGCTCTCATTGCTGGTGTTGG
TGCCTATCGGATCATGTCGGGTGGCGCTTTTACAGTGGGACAATTGACTACCTTCCTAAACTATGTGACTCAGTATACGA
AACCTTTTAATGATATCTCATCTGTTCTATCTGAACTTCAAAGTGCTTTGGCCTGTGCTGATCGCCTTTATATGATATTG
GATGAAGAGGAAATAACAGAAACAGGTAAGGTGGTCTTGGAAGAAGCAGATGTGCAGGGACGTTTTCAATTTGACCATGT
CCAATTTGGTTATTTGCCTAATAAACCTCTTATCAAGGATTTGAGCATTGATATCCCTGTCGCAAGTACTGTTGCCATTG
TTGGTCCAACAGGAGCGGGAAAATCTACCTTGATTAACCTGCTCATGCGTTTCTATGATTTGGACAAGGGGAACATTCTA
CTGGACGGTAGACCTATTACAGATTATACTCGTGAGAGTCTTCGGAAACAGATTGGGATGGTCTTGCAGGAAACTTGGCT
TGAGGTTGGCACTATTCATGATAATATTGCCTATGGAAATCCCGAAGCCAGTCGTGAAGAAGTTATAGCAGCAGCCAAGG
CTGCCAATGCAGATTTCTTTATTAAGCAGTTGCCTCAAGGCTATGACACCTACTTGAATGACGCGGGGCAATCCCTTTCT
CAGGGACAACGTCAGCTTTTGACTATTGCCCGCATATTTGTCAATGTGCCTAAAATCTTAATCTTGGATGAAGCCACTTC
TAGTATTGATACTCGTACAGAGCTCCTCATTCAAGAGGCCTTCGCTAAATTAATGAAAGGTCGAACAAGTTTCATCATTG
CCCATCGATTGTCTACCATCGAAAATGCGGACCTTATTTTGGTCATGAATAATGGGGATATCGTTGAACACGGAACCCAT
GAACGACTGATGCAAGCTAAGGGAATGTACTATCGTATGCAGACGGCCCAAAAGACACAAAATAGTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(25-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.396

100

0.387

Multiple sequence alignment