Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABXG87_RS02920 Genome accession   NZ_AP031488
Coordinates   583149..585017 (+) Length   622 a.a.
NCBI ID   WP_002886880.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 578149..590017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS02910 (Ssa13956_05140) gshAB 578604..580868 (-) 2265 WP_084871200.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  ABXG87_RS02915 (Ssa13956_05150) - 581414..583159 (+) 1746 WP_002886878.1 ABC transporter ATP-binding protein -
  ABXG87_RS02920 (Ssa13956_05160) rcrQ 583149..585017 (+) 1869 WP_002886880.1 ABC transporter ATP-binding protein Regulator
  ABXG87_RS02925 (Ssa13956_05170) - 585111..586634 (-) 1524 WP_353551841.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 622 a.a.        Molecular weight: 68761.13 Da        Isoelectric Point: 4.9866

>NTDB_id=98082 ABXG87_RS02920 WP_002886880.1 583149..585017(+) (rcrQ) [Streptococcus salivarius strain NBRC 13956]
MQNKKKANWGSLARLLRFLWQDYKLSLSIAFILIVVASLATVNLTASIQSLVDVYVQPMLKSGSHDFGPLLHFLTSVAVF
CLIGVIANYVSSLLMATISQDSLRSLRNQLFARMQKLPVRYFDTHQHGDIMSIYTNDIDALRQAVEQSIPQLLQTAITLI
GVTVTMLTVSPLLFIVVLVMVGIMFMVIKNVSAKSGRYFGEQQKNLGIENGFIEEMMSGQKVVKAFVHEEESMADFDKIN
EQLFESSYLANRYANVLMPILGNLGNVSFVLTALVGGLFALNGVGGLTIGGLMAFLQLNRSFNGPITQVSQQLNFVLMAL
AGADRIFDLLDEPEEVDQGKVTLVNYELVDGQMVVTDKKTNLWAWKHPRPNGDYELVELVGNVVFQDVDFSYDGKKQILH
DVNLYADKGQKVAFVGATGAGKTTITNLINRFYDIQSGVITYDGIDVKLIEKDSLRRSLGIVLQDTHLFTGTIAENIAYG
RADATREEILEAARIANVDSFVQHLDNGYDTVLTDDGAGLSNGQRQLIAIARAALANAPVLILDEATSSIDSRTEKMVQE
GMDRLMEGRTVFVIAHRLSTIVNSDVIMVMDHGRIIERGDHDSLMEQGGTYYRLYTGGLEID

Nucleotide


Download         Length: 1869 bp        

>NTDB_id=98082 ABXG87_RS02920 WP_002886880.1 583149..585017(+) (rcrQ) [Streptococcus salivarius strain NBRC 13956]
ATGCAGAATAAGAAAAAAGCTAATTGGGGCTCTCTAGCACGTCTTCTACGCTTTTTGTGGCAAGACTACAAACTTTCGCT
TTCTATCGCCTTTATCCTCATTGTTGTTGCTTCTTTGGCAACGGTCAATTTGACGGCCTCTATTCAGTCCTTGGTTGACG
TATACGTTCAACCCATGCTTAAATCTGGTAGCCATGACTTTGGTCCGCTTTTGCATTTCTTGACTTCAGTGGCTGTCTTC
TGTCTTATCGGTGTGATTGCCAACTATGTGTCATCACTCCTCATGGCGACGATTTCGCAAGATTCTCTACGTTCCCTTCG
TAATCAGCTCTTTGCTCGTATGCAAAAGCTTCCTGTTCGCTACTTTGACACTCACCAACACGGTGACATCATGTCTATCT
ACACCAACGACATCGATGCTCTCCGTCAGGCTGTTGAGCAATCTATTCCACAGTTGTTGCAAACGGCCATTACCCTTATT
GGGGTGACTGTAACCATGCTTACGGTTAGTCCTCTCCTCTTTATCGTGGTCCTAGTCATGGTAGGCATCATGTTTATGGT
CATCAAAAATGTATCAGCCAAATCAGGGCGTTACTTTGGTGAACAACAAAAGAATCTTGGGATTGAAAATGGCTTCATTG
AAGAAATGATGTCAGGTCAAAAAGTGGTCAAGGCCTTTGTTCACGAAGAAGAAAGCATGGCTGATTTTGACAAGATTAAC
GAGCAACTCTTTGAATCTTCTTACTTGGCCAACCGCTATGCCAATGTTCTCATGCCAATTCTTGGGAACTTAGGAAATGT
TTCCTTTGTTTTGACCGCCTTGGTTGGTGGACTCTTTGCCCTTAATGGTGTTGGTGGTTTGACTATCGGTGGTCTCATGG
CCTTCCTACAATTGAACCGTTCCTTCAACGGTCCTATTACTCAGGTCTCTCAACAACTGAACTTTGTTCTTATGGCACTT
GCAGGTGCTGACCGTATCTTTGACCTCTTGGATGAGCCAGAAGAAGTTGACCAAGGTAAGGTCACTTTGGTCAACTACGA
ATTGGTAGATGGTCAAATGGTTGTGACAGACAAGAAAACCAATCTCTGGGCTTGGAAACACCCACGTCCAAATGGCGACT
ACGAATTGGTCGAGTTGGTCGGAAATGTGGTCTTCCAAGACGTTGATTTCTCTTACGATGGTAAGAAACAAATCCTTCAT
GACGTTAATCTCTATGCAGACAAGGGGCAAAAGGTTGCCTTTGTCGGTGCGACAGGTGCTGGTAAGACGACGATTACCAA
CTTGATTAACCGTTTCTACGATATCCAATCTGGTGTGATTACTTATGATGGTATTGATGTCAAGCTGATTGAGAAAGATT
CTCTTCGTCGCTCGCTTGGTATCGTGCTTCAAGATACCCATCTCTTCACAGGGACTATCGCTGAAAATATTGCCTATGGC
CGTGCCGATGCGACACGTGAGGAAATTCTTGAAGCTGCCCGTATTGCTAACGTGGATTCCTTTGTGCAACACTTGGATAA
TGGGTATGACACTGTTCTTACAGATGACGGTGCAGGCTTGTCTAATGGGCAACGTCAGCTTATCGCCATTGCGCGTGCTG
CCCTTGCCAATGCACCAGTTCTTATCCTTGACGAGGCGACCTCCTCTATTGACTCTCGTACCGAAAAAATGGTACAAGAG
GGGATGGACCGACTTATGGAAGGACGTACGGTCTTCGTTATTGCCCACCGTCTTTCAACCATCGTCAACTCTGACGTTAT
CATGGTTATGGACCACGGACGAATCATTGAACGTGGTGATCACGACAGCCTTATGGAACAAGGTGGTACTTATTACCGAC
TCTATACTGGTGGTCTTGAAATTGATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(29-305)

ABC transporter (ABC_tran)

(399-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.236

98.875

0.368

Multiple sequence alignment