Detailed information NTG0980500

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AAFA15_RS08280
• Genome accession: NZ_CP151713
• Coordinates: 1711555..1712256 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain F15-02
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1706555..1717256

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFA15_RS08245 (AAFA15_08245)	kdsB	1707078..1707839 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AAFA15_RS08250 (AAFA15_08250)	-	1707851..1708831 (+)	981	WP_001075418.1	DNA polymerase III subunit delta'	-
AAFA15_RS08255 (AAFA15_08255)	-	1708843..1709184 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
AAFA15_RS08260 (AAFA15_08260)	-	1709202..1709975 (+)	774	WP_000497298.1	TatD family hydrolase	-
AAFA15_RS08265 (AAFA15_08265)	-	1710013..1710621 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AAFA15_RS08270 (AAFA15_08270)	-	1710631..1711185 (+)	555	WP_000841379.1	type II secretion system protein	-
AAFA15_RS08275 (AAFA15_08275)	xcpV	1711175..1711555 (+)	381	WP_000836910.1	type II secretion system minor pseudopilin GspI	Machinery gene
AAFA15_RS08280 (AAFA15_08280)	xcpW	1711555..1712256 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AAFA15_RS08285 (AAFA15_08285)	gspK	1712256..1713215 (+)	960	WP_000301481.1	type II secretion system minor pseudopilin GspK	-
AAFA15_RS08290 (AAFA15_08290)	-	1713445..1714041 (+)	597	WP_000908451.1	6-carboxytetrahydropterin synthase	-
AAFA15_RS08295 (AAFA15_08295)	ung	1714092..1714805 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
AAFA15_RS08300 (AAFA15_08300)	-	1714802..1715926 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
AAFA15_RS08305 (AAFA15_08305)	tadA	1715933..1716436 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
AAFA15_RS08310 (AAFA15_08310)	-	1716506..1716949 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=980500 AAFA15_RS08280 WP_000594572.1 1711555..1712256(+) (xcpW) [Acinetobacter baumannii strain F15-02]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=980500 AAFA15_RS08280 WP_000594572.1 1711555..1712256(+) (xcpW) [Acinetobacter baumannii strain F15-02]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991