Detailed information NTG0979852

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AAFA27_RS08395
• Genome accession: NZ_CP151688
• Coordinates: 1679773..1680474 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain 40288-CIRI
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1674773..1685474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFA27_RS08360 (AAFA27_08360)	kdsB	1675296..1676057 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AAFA27_RS08365 (AAFA27_08365)	-	1676069..1677049 (+)	981	WP_001075418.1	DNA polymerase III subunit delta'	-
AAFA27_RS08370 (AAFA27_08370)	-	1677061..1677402 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
AAFA27_RS08375 (AAFA27_08375)	-	1677420..1678193 (+)	774	WP_000497298.1	TatD family hydrolase	-
AAFA27_RS08380 (AAFA27_08380)	-	1678231..1678839 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AAFA27_RS08385 (AAFA27_08385)	-	1678849..1679403 (+)	555	WP_000841379.1	type II secretion system protein	-
AAFA27_RS08390 (AAFA27_08390)	xcpV	1679393..1679773 (+)	381	WP_000836910.1	type II secretion system minor pseudopilin GspI	Machinery gene
AAFA27_RS08395 (AAFA27_08395)	xcpW	1679773..1680474 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AAFA27_RS08400 (AAFA27_08400)	gspK	1680474..1681433 (+)	960	WP_000301481.1	type II secretion system minor pseudopilin GspK	-
AAFA27_RS08405 (AAFA27_08405)	-	1681663..1682259 (+)	597	WP_000908451.1	6-carboxytetrahydropterin synthase	-
AAFA27_RS08410 (AAFA27_08410)	ung	1682310..1683023 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
AAFA27_RS08415 (AAFA27_08415)	-	1683020..1684144 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
AAFA27_RS08420 (AAFA27_08420)	tadA	1684151..1684654 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
AAFA27_RS08425 (AAFA27_08425)	-	1684724..1685167 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=979852 AAFA27_RS08395 WP_000594572.1 1679773..1680474(+) (xcpW) [Acinetobacter baumannii strain 40288-CIRI]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=979852 AAFA27_RS08395 WP_000594572.1 1679773..1680474(+) (xcpW) [Acinetobacter baumannii strain 40288-CIRI]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991