Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AADZ70_RS08440 Genome accession   NZ_CP151679
Coordinates   1697997..1700357 (-) Length   786 a.a.
NCBI ID   WP_342007980.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1692997..1705357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS08420 (AADZ70_08420) - 1693072..1694634 (+) 1563 WP_047475552.1 SH3 domain-containing protein -
  AADZ70_RS08425 (AADZ70_08425) dtd 1694661..1695104 (-) 444 WP_016938814.1 D-aminoacyl-tRNA deacylase -
  AADZ70_RS08430 (AADZ70_08430) relA 1695117..1697321 (-) 2205 WP_264818896.1 GTP diphosphokinase -
  AADZ70_RS08435 (AADZ70_08435) - 1697479..1697991 (-) 513 WP_003152714.1 adenine phosphoribosyltransferase -
  AADZ70_RS08440 (AADZ70_08440) recJ 1697997..1700357 (-) 2361 WP_342007980.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AADZ70_RS08445 (AADZ70_08445) - 1700413..1700739 (-) 327 WP_016938811.1 lipopolysaccharide assembly LapA domain-containing protein -
  AADZ70_RS08450 (AADZ70_08450) - 1700803..1701300 (-) 498 WP_016938810.1 cation:proton antiporter regulatory subunit -
  AADZ70_RS08455 (AADZ70_08455) secDF 1701431..1703650 (-) 2220 WP_064777702.1 protein translocase subunit SecDF -
  AADZ70_RS08460 (AADZ70_08460) - 1703687..1703983 (-) 297 WP_016938808.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 87624.11 Da        Isoelectric Point: 4.8645

>NTDB_id=979691 AADZ70_RS08440 WP_342007980.1 1697997..1700357(-) (recJ) [Bacillus sp. YBsi01]
MLASKMRWEIQQPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARHFLHTKDADFYDPYELKGMREAVDRIKLAVSQG
EPIMIYGDYDADGVTSTSVMLTALRQLSANVDFYIPDRFTEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKEL
GLDVIITDHHEPGPELPDVFAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPEAMLDLAAIGTVADLVPLHDENRLI
ASLGIEKLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGRIEQADPAVHLLMTEDQFEAEELASDIDRLNKE
RQKMVKTMTEEAVEMVQQQDGNPSAIVVAKAGWNPGVVGIVASKLAERFYRPAVVLGIDEEQGIAKGSARSIRGFNLFTS
LSQCRDILPHFGGHPMAAGMTLKAEDVPDLRDRLNQLAEETLTEEDFIPIQEVDLVCGVEDITVESITELNMLSPFGMLN
PKPHVMVENAVLDEVRLIGANKNHVKMTVKNDAAVLDCVGFNQGELEAGIVPGSAISIVGEMSINEWNNRKKPQLMIKDA
AVLEWQLFDIRGKRMWEDTVAALPKEKRVLISFNEKTVRKLRGEELPDELVQITSESEAEALPLDGKYAVFLDVPPSEER
LKRLLDGKKPERIYFVFINHEEHFLSSFPSRSDFKWFYAFLLKRGNFDLSKHGSELARHKGWSIDTINFMTKVFFDLGFV
KIEDGVLSVVSGAKKRDLADSQTYQVKQQLMELDQKLNYSAAHELKEWLNKLMNQGSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=979691 AADZ70_RS08440 WP_342007980.1 1697997..1700357(-) (recJ) [Bacillus sp. YBsi01]
ATGTTAGCGTCAAAAATGCGCTGGGAAATCCAGCAGCCGGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCGCTGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGCGCAAGGCATTTTTTACATACAAAGG
ATGCAGACTTTTATGACCCGTATGAATTAAAAGGAATGCGGGAAGCAGTTGATCGGATAAAGCTGGCGGTTTCTCAAGGG
GAACCGATTATGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACTTCAGTGATGCTGACGGCACTCAGACAGCT
GTCAGCAAACGTTGACTTTTATATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCGCTCCATAA
AAGAGCGGGGTTTTTCGCTTATCATTACAGTGGATACGGGCATCGCCGCCGTTCATGAAGCTGAAGTCGCAAAAGAGCTG
GGCCTAGACGTCATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCCGACGTATTTGCGATCATCCACCCGAAGCA
GCCGGGCTGCAGCTATCCGTTTAAAGAATTGGCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTTCTT
TGCCGGAAGCTATGCTGGACTTAGCGGCAATCGGTACGGTTGCGGATCTGGTGCCGCTGCACGATGAAAACAGATTAATT
GCGTCACTTGGGATCGAAAAGCTTCGGACGACAAATCGGCCGGGTCTCAAAGCTCTGATTAAGCTTTCCGGCGGGGATAT
CGGACAAGCTGATGAGGAAACGATCGGGTTTCAGGTTGCACCGAGGCTGAATGCCGTCGGAAGAATAGAACAGGCTGATC
CCGCCGTGCACCTGCTGATGACCGAAGACCAGTTTGAAGCGGAGGAATTGGCTTCGGATATTGACCGGCTGAATAAGGAA
CGCCAGAAAATGGTGAAAACCATGACCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGACGGAAACCCGTCTGCCATTGT
AGTGGCAAAAGCCGGCTGGAACCCGGGGGTTGTCGGGATTGTCGCATCGAAGCTCGCTGAACGTTTTTATCGCCCCGCTG
TCGTGCTGGGGATAGATGAGGAGCAGGGAATCGCCAAAGGATCGGCGCGAAGCATCAGGGGTTTCAACCTTTTTACGAGC
CTTTCACAGTGCAGAGACATTCTTCCTCATTTCGGCGGGCATCCGATGGCCGCGGGAATGACGTTAAAGGCTGAAGATGT
GCCGGATTTAAGAGACAGGCTGAATCAATTGGCTGAAGAAACCCTTACGGAAGAGGATTTTATCCCGATTCAGGAGGTTG
ATCTTGTCTGCGGCGTCGAAGACATAACCGTTGAAAGCATTACAGAATTGAATATGCTCTCGCCGTTCGGCATGCTTAAC
CCTAAACCGCATGTCATGGTGGAAAACGCCGTGCTTGATGAAGTGCGCCTGATCGGAGCGAATAAAAATCACGTGAAAAT
GACGGTGAAAAATGATGCTGCCGTTCTCGATTGCGTCGGCTTTAACCAAGGAGAGCTGGAAGCCGGAATTGTCCCCGGAT
CAGCGATTTCCATTGTCGGCGAAATGTCCATTAATGAATGGAACAACAGAAAGAAACCCCAGCTGATGATTAAAGACGCT
GCGGTGCTGGAATGGCAGCTTTTTGATATCAGAGGCAAGCGGATGTGGGAAGATACGGTTGCTGCGCTGCCGAAGGAAAA
ACGGGTGCTCATCAGTTTTAACGAAAAAACTGTCCGAAAACTTCGTGGCGAAGAGCTGCCGGACGAGCTGGTTCAGATCA
CGTCGGAATCCGAGGCGGAGGCTCTTCCGCTTGACGGAAAGTATGCCGTCTTTCTGGATGTGCCGCCGTCAGAGGAGCGG
CTCAAGCGTTTGCTTGACGGGAAGAAGCCGGAACGGATTTATTTTGTTTTTATCAATCATGAAGAACATTTTCTGTCCTC
ATTTCCATCGCGGAGTGATTTCAAGTGGTTTTACGCATTTCTCTTGAAAAGGGGCAATTTTGACTTAAGTAAGCATGGTT
CAGAGCTTGCGAGACACAAAGGATGGTCAATTGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAAGATGGTGTGCTGTCTGTCGTGAGCGGCGCGAAAAAACGCGACCTTGCAGATTCGCAAACCTACCAGGTAAA
ACAGCAGCTGATGGAATTAGACCAGAAGCTCAATTATTCCGCGGCCCATGAGCTGAAGGAATGGCTGAATAAGCTGATGA
ACCAAGGTTCAGAGGCTTATGAAAGTACGAGGAGGACATAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

81.807

100

0.818

Multiple sequence alignment