Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AADZ70_RS04035 Genome accession   NZ_CP151679
Coordinates   726441..727220 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 721441..732220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS04015 (AADZ70_04015) trmFO 722128..723435 (+) 1308 WP_016936130.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AADZ70_RS04020 (AADZ70_04020) xerC 723505..724422 (+) 918 WP_016936129.1 tyrosine recombinase XerC -
  AADZ70_RS04025 (AADZ70_04025) hslV 724438..724983 (+) 546 WP_016936128.1 ATP-dependent protease subunit HslV -
  AADZ70_RS04030 (AADZ70_04030) hslU 725000..726403 (+) 1404 WP_342007755.1 HslU--HslV peptidase ATPase subunit -
  AADZ70_RS04035 (AADZ70_04035) codY 726441..727220 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AADZ70_RS04040 (AADZ70_04040) flgB 727574..727963 (+) 390 WP_016936126.1 flagellar basal body rod protein FlgB -
  AADZ70_RS04045 (AADZ70_04045) flgC 727963..728415 (+) 453 WP_016936125.1 flagellar basal body rod protein FlgC -
  AADZ70_RS04050 (AADZ70_04050) fliE 728426..728746 (+) 321 WP_060962795.1 flagellar hook-basal body complex protein FliE -
  AADZ70_RS04055 (AADZ70_04055) fliF 728789..730405 (+) 1617 WP_342007756.1 flagellar basal-body MS-ring/collar protein FliF -
  AADZ70_RS04060 (AADZ70_04060) fliG 730418..731434 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  AADZ70_RS04065 (AADZ70_04065) fliH 731427..732179 (+) 753 WP_342007757.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=979672 AADZ70_RS04035 WP_013352252.1 726441..727220(+) (codY) [Bacillus sp. YBsi01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=979672 AADZ70_RS04035 WP_013352252.1 726441..727220(+) (codY) [Bacillus sp. YBsi01]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCAGAAACGCTTCGCGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAACCTTTTC
AACGTTCCGGAGACATCTTCAAACCTTGATATCAACAGCGAATATACGGCTTTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACGACGATTGTGCCGATTATCGGCGGAGGAGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGACC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCAGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTTTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTAGGCATTACCC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTCGAAAGCGCCGGCGTTATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAATAAATTCCTTATTGAATTGGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment