Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ACLQ7P_RS14140 Genome accession   NZ_CP181322
Coordinates   2625733..2626182 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2620733..2631182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS14110 (ACLQ7P_14110) sepM 2620812..2621837 (-) 1026 WP_103330244.1 protease DdcP Regulator
  ACLQ7P_RS14115 (ACLQ7P_14115) ylbK 2621839..2622621 (-) 783 WP_003232221.1 patatin family protein -
  ACLQ7P_RS14120 (ACLQ7P_14120) spoVV 2622802..2624028 (+) 1227 WP_103330245.1 dipicolinic acid transporter SpoVV -
  ACLQ7P_RS14125 (ACLQ7P_14125) coaD 2624039..2624524 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ACLQ7P_RS14130 (ACLQ7P_14130) rsmD 2624529..2625083 (-) 555 WP_326121365.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACLQ7P_RS14135 (ACLQ7P_14135) ylbG 2625406..2625678 (-) 273 WP_069964462.1 YlbG family protein -
  ACLQ7P_RS14140 (ACLQ7P_14140) ylbF 2625733..2626182 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ACLQ7P_RS14145 (ACLQ7P_14145) ylbE 2626298..2626537 (-) 240 WP_003232231.1 YlbE-like family protein -
  ACLQ7P_RS14150 (ACLQ7P_14150) ylbD 2626553..2626951 (-) 399 WP_003232233.1 YlbD family protein -
  ACLQ7P_RS14155 (ACLQ7P_14155) ylbC 2627183..2628223 (-) 1041 WP_014479713.1 CAP domain-containing protein -
  ACLQ7P_RS14160 (ACLQ7P_14160) ylbB 2628307..2628753 (-) 447 WP_003221362.1 CBS domain-containing protein -
  ACLQ7P_RS14165 (ACLQ7P_14165) ylbA 2628893..2629255 (+) 363 WP_014479712.1 YugN family protein -
  ACLQ7P_RS14170 (ACLQ7P_14170) ctaG 2629287..2630180 (-) 894 WP_416247054.1 cytochrome c oxidase assembly factor CtaG -
  ACLQ7P_RS14175 (ACLQ7P_14175) ctaF 2630207..2630539 (-) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  ACLQ7P_RS14180 (ACLQ7P_14180) ctaE 2630542..2631165 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=979258 ACLQ7P_RS14140 WP_003221370.1 2625733..2626182(-) (ylbF) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=979258 ACLQ7P_RS14140 WP_003221370.1 2625733..2626182(-) (ylbF) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1