Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8619_RS09050 Genome accession   NZ_AP026918
Coordinates   1749824..1750855 (-) Length   343 a.a.
NCBI ID   WP_000346795.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700009     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744824..1755855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8619_RS08995 (PC0009_17570) - 1744913..1745674 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  R8619_RS09000 (PC0009_17580) ytpR 1745707..1746333 (-) 627 WP_000578302.1 YtpR family tRNA-binding protein -
  R8619_RS09005 (PC0009_17590) - 1746349..1746666 (-) 318 WP_000615774.1 thioredoxin family protein -
  R8619_RS09010 (PC0009_17600) - 1746663..1746962 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  R8619_RS09015 - 1747056..1747187 (+) 132 WP_001811306.1 hypothetical protein -
  R8619_RS09025 - 1747299..1747444 (-) 146 Protein_1762 cell wall-binding protein -
  R8619_RS09030 (PC0009_17610) - 1747656..1748330 (-) 675 WP_000725722.1 LiaF transmembrane domain-containing protein -
  R8619_RS09035 (PC0009_17620) - 1748336..1748782 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R8619_RS09040 - 1748896..1749399 (-) 504 WP_000800939.1 phosphatase PAP2 family protein -
  R8619_RS09045 (PC0009_17630) - 1749396..1749758 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  R8619_RS09050 (PC0009_17640) rcrQ 1749824..1750855 (-) 1032 WP_000346795.1 ABC transporter ATP-binding protein Regulator
  R8619_RS09055 (PC0009_17650) rcrP 1750862..1751683 (-) 822 WP_000601691.1 ABC transporter permease Regulator
  R8619_RS09060 (PC0009_17660) - 1751700..1752170 (-) 471 WP_000360532.1 MarR family winged helix-turn-helix transcriptional regulator -
  R8619_RS09065 (PC0009_17670) - 1752294..1753010 (-) 717 WP_000532874.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R8619_RS09070 (PC0009_17680) ply 1753891..1755306 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  R8619_RS09075 (PC0009_17690) - 1755317..1755727 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37976.15 Da        Isoelectric Point: 4.4400

>NTDB_id=97815 R8619_RS09050 WP_000346795.1 1749824..1750855(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700009]
MDFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=97815 R8619_RS09050 WP_000346795.1 1749824..1750855(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700009]
ATGGACTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTACAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

65.306

0.528
  rcrP Streptococcus mutans UA159

37.791

100

0.379

Multiple sequence alignment