Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACM6AQ_RS07770 Genome accession   NZ_CP181136
Coordinates   1613766..1615040 (+) Length   424 a.a.
NCBI ID   WP_000102742.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0619     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1608766..1620040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AQ_RS07740 (ACM6AQ_07740) mnmA 1608968..1610086 (-) 1119 WP_098817876.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACM6AQ_RS07745 (ACM6AQ_07745) - 1610087..1611229 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  ACM6AQ_RS07750 (ACM6AQ_07750) - 1611541..1612554 (+) 1014 WP_072491718.1 LLM class flavin-dependent oxidoreductase -
  ACM6AQ_RS07755 (ACM6AQ_07755) - 1612791..1612937 (-) 147 WP_000009238.1 SAS049 family protein -
  ACM6AQ_RS07760 (ACM6AQ_07760) - 1612977..1613159 (-) 183 WP_000752909.1 CsbD family protein -
  ACM6AQ_RS07765 (ACM6AQ_07765) cymR 1613259..1613681 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  ACM6AQ_RS07770 (ACM6AQ_07770) rarA 1613766..1615040 (+) 1275 WP_000102742.1 replication-associated recombination protein A Machinery gene
  ACM6AQ_RS07775 (ACM6AQ_07775) - 1615201..1615974 (-) 774 WP_000682646.1 ThiF family adenylyltransferase -
  ACM6AQ_RS07780 (ACM6AQ_07780) - 1615974..1616102 (-) 129 WP_014937034.1 hypothetical protein -
  ACM6AQ_RS07790 (ACM6AQ_07790) aspS 1616435..1618201 (-) 1767 WP_072491717.1 aspartate--tRNA ligase -
  ACM6AQ_RS07795 (ACM6AQ_07795) hisS 1618217..1619479 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47237.81 Da        Isoelectric Point: 8.3539

>NTDB_id=978087 ACM6AQ_RS07770 WP_000102742.1 1613766..1615040(+) (rarA) [Staphylococcus aureus strain AG21-0619]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKSKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=978087 ACM6AQ_RS07770 WP_000102742.1 1613766..1615040(+) (rarA) [Staphylococcus aureus strain AG21-0619]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAGTTATATCCTTTAAATGATGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTAAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGGGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGTCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAGCAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684