Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8563_RS10880 Genome accession   NZ_AP026917
Coordinates   1753517..1754488 (-) Length   323 a.a.
NCBI ID   WP_000346794.1    Uniprot ID   A0A4J2GZ15
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1748517..1759488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS09065 (PC0007_17600) - 1748603..1749364 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  R8563_RS09070 (PC0007_17610) ytpR 1749397..1750023 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  R8563_RS09075 (PC0007_17620) - 1750039..1750356 (-) 318 WP_000615767.1 thioredoxin family protein -
  R8563_RS09080 (PC0007_17630) - 1750353..1750652 (-) 300 WP_001013973.1 DUF4651 domain-containing protein -
  R8563_RS09085 - 1750850..1750912 (-) 63 WP_219300018.1 hypothetical protein -
  R8563_RS09090 (PC0007_17640) - 1750937..1751128 (-) 192 WP_000122504.1 hypothetical protein -
  R8563_RS09095 (PC0007_17650) - 1751289..1751963 (-) 675 WP_000725740.1 LiaF transmembrane domain-containing protein -
  R8563_RS09100 (PC0007_17660) - 1751969..1752415 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R8563_RS09105 (PC0007_17670) - 1752529..1753032 (-) 504 WP_000800938.1 phosphatase PAP2 family protein -
  R8563_RS09110 (PC0007_17680) - 1753029..1753391 (-) 363 WP_000078802.1 DUF2200 domain-containing protein -
  R8563_RS10880 (PC0007_17690) rcrQ 1753517..1754488 (-) 972 WP_000346794.1 ABC transporter ATP-binding protein/permease Regulator
  R8563_RS10885 (PC0007_17710) - 1754495..1755316 (-) 822 Protein_1781 ABC transporter permease -
  R8563_RS09120 - 1755333..1755804 (-) 472 Protein_1782 MarR family winged helix-turn-helix transcriptional regulator -
  R8563_RS09125 (PC0007_17740) - 1755928..1756644 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R8563_RS09130 (PC0007_17750) ply 1757525..1758940 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  R8563_RS09135 (PC0007_17760) - 1758951..1759361 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35709.93 Da        Isoelectric Point: 4.6997

>NTDB_id=97768 R8563_RS10880 WP_000346794.1 1753517..1754488(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700007]
MDFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPAQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSIGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQRVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMV

Nucleotide


Download         Length: 972 bp        

>NTDB_id=97768 R8563_RS10880 WP_000346794.1 1753517..1754488(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700007]
ATGGACTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAATAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAGGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGTGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(68-118)

ABC transporter (ABC_tran)

(120-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4J2GZ15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.976

63.467

0.514
  rcrP Streptococcus mutans UA159

37.963

100

0.381

Multiple sequence alignment