Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | ACAM23_RS08610 | Genome accession | NZ_AP031394 |
| Coordinates | 1663935..1665206 (+) | Length | 423 a.a. |
| NCBI ID | WP_050200165.1 | Uniprot ID | - |
| Organism | Streptococcus pneumoniae strain 16P28 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1658935..1670206
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACAM23_RS08575 (SPNE16P28_16950) | - | 1659996..1660424 (-) | 429 | WP_000418168.1 | NUDIX hydrolase | - |
| ACAM23_RS08580 (SPNE16P28_16960) | - | 1660405..1661493 (-) | 1089 | WP_000719722.1 | site-2 protease family protein | - |
| ACAM23_RS08585 (SPNE16P28_16970) | - | 1661512..1661982 (-) | 471 | WP_000257107.1 | DUF3013 family protein | - |
| ACAM23_RS08590 (SPNE16P28_16980) | - | 1662273..1662725 (-) | 453 | WP_000961810.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| ACAM23_RS08595 (SPNE16P28_16990) | - | 1662762..1662941 (-) | 180 | WP_050200164.1 | type II toxin-antitoxin system HicA family toxin | - |
| ACAM23_RS08600 (SPNE16P28_17000) | - | 1663078..1663257 (-) | 180 | WP_001048906.1 | hypothetical protein | - |
| ACAM23_RS08605 (SPNE16P28_17010) | - | 1663422..1663643 (-) | 222 | WP_000425689.1 | hypothetical protein | - |
| ACAM23_RS08610 (SPNE16P28_17020) | rarA | 1663935..1665206 (+) | 1272 | WP_050200165.1 | replication-associated recombination protein A | Machinery gene |
| ACAM23_RS08620 (SPNE16P28_17030) | - | 1665751..1667070 (-) | 1320 | WP_369608065.1 | glycoside hydrolase family 32 protein | - |
| ACAM23_RS08625 (SPNE16P28_17040) | - | 1667080..1668696 (-) | 1617 | WP_000669745.1 | ABC transporter substrate-binding protein | - |
| ACAM23_RS08630 (SPNE16P28_17050) | - | 1668725..1669615 (-) | 891 | WP_050200168.1 | carbohydrate ABC transporter permease | - |
Sequence
Protein
Download Length: 423 a.a. Molecular weight: 46998.47 Da Isoelectric Point: 6.0996
>NTDB_id=97709 ACAM23_RS08610 WP_050200165.1 1663935..1665206(+) (rarA) [Streptococcus pneumoniae strain 16P28]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFNFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDESIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFNFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDESIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI
Nucleotide
Download Length: 1272 bp
>NTDB_id=97709 ACAM23_RS08610 WP_050200165.1 1663935..1665206(+) (rarA) [Streptococcus pneumoniae strain 16P28]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTAATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGAGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTAATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGAGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
57.279 |
99.054 |
0.567 |