Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   R8563_RS00115 Genome accession   NZ_AP026917
Coordinates   21600..21836 (+) Length   78 a.a.
NCBI ID   WP_000939545.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 16600..26836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS00105 - 20294..20503 (+) 210 Protein_14 transposase -
  R8563_RS00110 - 20538..21335 (-) 798 Protein_15 transposase -
  R8563_RS00115 (PC0007_00150) comW 21600..21836 (+) 237 WP_000939545.1 sigma(X)-activator ComW Regulator
  R8563_RS00120 (PC0007_00160) - 22067..23353 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  R8563_RS00125 (PC0007_00170) tadA 23554..24021 (+) 468 WP_000291875.1 tRNA adenosine(34) deaminase TadA -
  R8563_RS00135 (PC0007_00180) - 24208..24651 (+) 444 WP_000701992.1 dUTP diphosphatase -
  R8563_RS00140 (PC0007_00190) - 24653..25168 (+) 516 WP_000691236.1 histidine phosphatase family protein -
  R8563_RS00145 (PC0007_00200) radA 25182..26543 (+) 1362 WP_074017595.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9658.13 Da        Isoelectric Point: 6.7051

>NTDB_id=97693 R8563_RS00115 WP_000939545.1 21600..21836(+) (comW) [Streptococcus pneumoniae strain PZ900700007]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRKDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=97693 R8563_RS00115 WP_000939545.1 21600..21836(+) (comW) [Streptococcus pneumoniae strain PZ900700007]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAAGGATTTTA
TTGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGTTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

100

100

1
  comW Streptococcus pneumoniae D39

100

100

1
  comW Streptococcus pneumoniae R6

100

100

1
  comW Streptococcus pneumoniae TIGR4

100

100

1
  comW Streptococcus mitis SK321

75.641

100

0.756
  comW Streptococcus mitis NCTC 12261

75.325

98.718

0.744

Multiple sequence alignment