Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACM6AU_RS07710 Genome accession   NZ_CP181097
Coordinates   1609875..1611149 (+) Length   424 a.a.
NCBI ID   WP_416152616.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0627     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1604875..1616149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AU_RS07680 (ACM6AU_07680) mnmA 1605077..1606195 (-) 1119 WP_000066103.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACM6AU_RS07685 (ACM6AU_07685) - 1606196..1607338 (-) 1143 WP_000409161.1 cysteine desulfurase family protein -
  ACM6AU_RS07690 (ACM6AU_07690) - 1607650..1608663 (+) 1014 WP_000985881.1 LLM class flavin-dependent oxidoreductase -
  ACM6AU_RS07695 (ACM6AU_07695) - 1608900..1609046 (-) 147 WP_000009238.1 SAS049 family protein -
  ACM6AU_RS07700 (ACM6AU_07700) - 1609086..1609268 (-) 183 WP_000752909.1 CsbD family protein -
  ACM6AU_RS07705 (ACM6AU_07705) cymR 1609368..1609790 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  ACM6AU_RS07710 (ACM6AU_07710) rarA 1609875..1611149 (+) 1275 WP_416152616.1 replication-associated recombination protein A Machinery gene
  ACM6AU_RS07715 (ACM6AU_07715) - 1611310..1612083 (-) 774 WP_000682645.1 ThiF family adenylyltransferase -
  ACM6AU_RS07720 (ACM6AU_07720) - 1612083..1612211 (-) 129 WP_001827648.1 hypothetical protein -
  ACM6AU_RS07730 (ACM6AU_07730) aspS 1612543..1614309 (-) 1767 WP_000044803.1 aspartate--tRNA ligase -
  ACM6AU_RS07735 (ACM6AU_07735) hisS 1614325..1615587 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47206.80 Da        Isoelectric Point: 8.6816

>NTDB_id=976672 ACM6AU_RS07710 WP_416152616.1 1609875..1611149(+) (rarA) [Staphylococcus aureus strain AG21-0627]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDEENGLKTYQPKIGEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=976672 ACM6AU_RS07710 WP_416152616.1 1609875..1611149(+) (rarA) [Staphylococcus aureus strain AG21-0627]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATAGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATCCATCGACTAGATAAAGC
CAAACAAGATTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTTGAATTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGAAGAGAATGGTTTGAAAACATATCAACCCAAAATTGGTGAAGATGCCATGACCTACTTTTC
TACACAAAGTCAAGGTGATGTTCGTAGTGCGCTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAGGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCCATCCGTGGTAGTGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATCCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGACCGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684