Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AADZ52_RS07275 Genome accession   NZ_CP151430
Coordinates   1440081..1442477 (-) Length   798 a.a.
NCBI ID   WP_185412081.1    Uniprot ID   -
Organism   Listeria welshimeri strain 4-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1435081..1447477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ52_RS07255 (AADZ52_07245) - 1435559..1436254 (-) 696 WP_185309100.1 ABC transporter ATP-binding protein -
  AADZ52_RS07260 (AADZ52_07250) - 1436263..1437762 (-) 1500 WP_011702309.1 ABC transporter permease -
  AADZ52_RS07265 (AADZ52_07255) pieR 1437929..1438615 (+) 687 WP_011702310.1 two component system response regulator PieR -
  AADZ52_RS07270 (AADZ52_07260) pieS 1438612..1440051 (+) 1440 WP_194354679.1 two component system sensor histidine kinase PieS -
  AADZ52_RS07275 (AADZ52_07265) recD2 1440081..1442477 (-) 2397 WP_185412081.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AADZ52_RS07280 (AADZ52_07270) - 1442500..1443138 (-) 639 WP_185305417.1 tetratricopeptide repeat protein -
  AADZ52_RS07285 (AADZ52_07275) - 1443182..1443922 (-) 741 WP_097349547.1 alpha/beta hydrolase -
  AADZ52_RS07290 (AADZ52_07280) mnmA 1444039..1445154 (-) 1116 WP_011702315.1 tRNA 2-thiouridine(34) synthase MnmA -
  AADZ52_RS07295 (AADZ52_07285) - 1445173..1446321 (-) 1149 WP_011702316.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90188.36 Da        Isoelectric Point: 4.8174

>NTDB_id=976592 AADZ52_RS07275 WP_185412081.1 1440081..1442477(-) (recD2) [Listeria welshimeri strain 4-43]
MAEQESLALFDDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKAERFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQVYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGVLFML
DSVCMQQGHVYMEKEVLLGEVTYLLEESEGIRIDQAILLQQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQDQFPQSEFLLALGELEERIGVHYGDSQREALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGLSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILHSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFAKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLMSEDVMLEQMTNKRILTTENITEIDPMIGMEGITPEQFMVG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=976592 AADZ52_RS07275 WP_185412081.1 1440081..1442477(-) (recD2) [Listeria welshimeri strain 4-43]
ATGGCAGAACAAGAATCTCTTGCCTTATTTGACGATACACCAGAAGAACTTTTTATGAAAGGCACGATGCTATCTACCAT
TTTTTATAATGCCGAAAACCTCTTTTCTGTGGTACGGATTTTAGTTAAAGAAACCAATGCGGACTGGGATGAAAAAGACA
TTATTGTGACTGGTTTTTTTCCTGCGCTTCATGAACAAGAAGTATATACTTTTTATGGGAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAGAGCGATTTCGAAAAGAAATGCCTCAATCTCGTGCCGGATTAATTAATTATCTTTCTGG
TGAACTTTTTAAAGGAATTGGCAAGGTCACAGCAGAAAATATTGTTGACACAATTGGTGATGATGCTATTACAAAAATAT
TATCAGATCCAAGTTTACTAAATACTGTTCCCAAATTGCCATCAGGTGCTGCGGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGTCTAGAACATGTCATGGTTGGTTTGAATGAATACGGCTTTGGTCCGCAATTATCAATGAAAATTTTTCAAGT
ATATAAACAAAATGCTATTGAAGTTTTAGAAAATAATCCGTATAAGTTAATTGAAGATGTAAAAGGGATCGGATTTCAGC
GTGCCGATGAGCTTGGGCGAAAACTGGGGCTCGGTGGGAATCATCCAGAACGCCTTCGTGCAGGTGTTTTATTTATGCTA
GATTCTGTTTGTATGCAACAAGGGCATGTGTATATGGAAAAAGAGGTTTTGCTTGGTGAAGTAACTTATTTGCTTGAAGA
AAGTGAAGGCATCAGGATTGACCAAGCTATTTTATTACAACAAGTGGAAAAGCTCGCAGAAGAACAAAAAATCATCACTG
AAAATACTCGTGTATACATGCCGTCACTATACTATTCAGAAAGCGGTTTTGCTTATCATGTAAAACGGATGTTAAAGCAA
ACCGAATATCAAGATCAATTTCCGCAATCTGAGTTTTTATTAGCACTTGGAGAATTGGAAGAACGTATTGGAGTACATTA
CGGAGATTCTCAGCGTGAAGCGTTAGAACAAGCACTAATGTCGCCAATGTTAGTTTTGACTGGTGGACCTGGTACTGGGA
AAACAACTGTTATAAAAGGGATTGTGGAACTCTACGCGGAATTGAATGGTCTAAGTCTTGATCCGCACGCGTATAAAGAT
GGTGCTACTTTTCCAGTGTTACTTGCTGCGCCAACAGGTCGGGCAGCTAAACGGATGTCTGAATCTACCGGTCTTCCAGC
AATGACCATTCACCGTTTACTTGGAATGAATGGACAAGAACAAATGGATGACGATGCCGAAAGATTAATTGATGGTCGGC
TTTTAATTGTAGATGAAATGTCAATGGTTGATATTTGGCTTGCGAATCAATTATTCCGAGCCTTACCAGCTCATATGCAA
GTAGTACTAGTTGGTGACCAAGACCAGCTTCCATCAGTTGGACCTGGCCAAGTTTTGAAAGATATTCTACATTCAGAGCA
AATTCCAACTGTCGCTCTTTCAGATATTTATCGTCAAAAAGATGGTTCATCCATTATTGAAATGGCTCATTATATTAAAG
AAGGGATGCTACCAGCTGATTTTGCGAAAAATAGTGCAGATCGCTCGTTTTTCCACTGTACAGTAAACCAGATTGGGGAT
GTAGTTGAACAAGTCGTAAAAAATGCTAAAAATAAAGGTTTCCGCGCAAAAGACATTCAAGTGTTAGCACCGATGTATCG
CGGGCCAGCAGGAATTGATATTTTAAATAAAAAGTTGCAAGAAATTTTCAATCCTAATGATACCGGCCGCCGAAAAGAAG
TACAATTCGGGGAAATTAAGTATCGGGTTCACGACAAGGTGCTGCAATTAATTAATCAACCTGAAAAGAACGTTTTTAAC
GGAGATATTGGTGAAATAGTTTCGATAATCTATGCGAAAGAAAATACTGAAAAACAAGATTTGATTGTGGTTCAATTTGA
TCAAACGGAGGTTTCTTATTACAGACAAGAATTTAATCAATTAACCCATGCTTATTGTTGTTCGATTCATAAAGCCCAAG
GGAGCGAGTTTCCAATTGTGATTATGCCAATTGTGCGCAGTTATTATCGAATGTTACGCCGTGATTTACTTTATACAGGA
GTGACAAGAAGTAAACAATTCCTTATCCTGTGCGGAGAAGAAGAAGCTTTTCGAATGGGCGTAGAGCGTGTGGATGAAAA
CAAACGAAATACAACCCTCTCTGAACGTTTAATGAGCGAAGATGTAATGCTAGAACAAATGACGAATAAACGCATATTAA
CGACGGAAAATATTACAGAAATTGATCCTATGATTGGAATGGAAGGGATTACCCCAGAACAATTTATGGTAGGATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

AAA domain (AAA_30)

(347-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.107

98.747

0.564

Multiple sequence alignment