Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABWW09_RS10020 Genome accession   NZ_AP031332
Coordinates   1844245..1845510 (+) Length   421 a.a.
NCBI ID   WP_244344540.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1839245..1850510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWW09_RS09990 (TthTF27_19750) - 1839439..1840623 (+) 1185 WP_353300324.1 ABC transporter substrate-binding protein -
  ABWW09_RS09995 (TthTF27_19760) folE 1840636..1841256 (-) 621 WP_008633832.1 GTP cyclohydrolase I FolE -
  ABWW09_RS10000 (TthTF27_19770) - 1841295..1841987 (-) 693 WP_353300325.1 gamma carbonic anhydrase family protein -
  ABWW09_RS10005 (TthTF27_19780) - 1841968..1842348 (-) 381 WP_011228981.1 NUDIX hydrolase -
  ABWW09_RS10010 (TthTF27_19790) - 1842339..1843202 (-) 864 WP_353300326.1 DUF1028 domain-containing protein -
  ABWW09_RS10015 (TthTF27_19800) - 1843539..1844214 (-) 676 Protein_1952 hypothetical protein -
  ABWW09_RS10020 (TthTF27_19810) rarA 1844245..1845510 (+) 1266 WP_244344540.1 replication-associated recombination protein A Machinery gene
  ABWW09_RS10025 (TthTF27_19820) - 1845461..1846030 (-) 570 WP_353300327.1 hypothetical protein -
  ABWW09_RS10030 (TthTF27_19830) - 1846057..1846773 (-) 717 WP_353300942.1 carbohydrate ABC transporter permease -
  ABWW09_RS10035 (TthTF27_19840) - 1846904..1848205 (-) 1302 WP_353300328.1 ammonia-forming cytochrome c nitrite reductase subunit c552 -
  ABWW09_RS10040 (TthTF27_19850) nrfH 1848216..1848674 (-) 459 WP_353300329.1 cytochrome c nitrite reductase small subunit -
  ABWW09_RS10045 (TthTF27_19860) - 1848780..1849958 (+) 1179 Protein_1958 CoA transferase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45994.74 Da        Isoelectric Point: 7.6004

>NTDB_id=97628 ABWW09_RS10020 WP_244344540.1 1844245..1845510(+) (rarA) [Thermus thermophilus strain TF27]
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLGSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=97628 ABWW09_RS10020 WP_244344540.1 1844245..1845510(+) (rarA) [Thermus thermophilus strain TF27]
ATGGGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
TCCCAAGGGGCTTCTGAGGCGGATGCTGGAGGCGGGGCGGCTCTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAGGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCAAAGGGGGGTCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAAGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACCCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTAGGGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCCGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCTGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAACCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)

AAA C-terminal domain (AAA_assoc_2)

(176-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.48

100

0.385

Multiple sequence alignment