Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AADV39_RS08170 Genome accession   NZ_CP151288
Coordinates   1614990..1615769 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain M4019     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1609990..1620769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADV39_RS08150 trmFO 1610677..1611984 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AADV39_RS08155 xerC 1612054..1612971 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  AADV39_RS08160 hslV 1612987..1613532 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  AADV39_RS08165 hslU 1613540..1614952 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  AADV39_RS08170 codY 1614990..1615769 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AADV39_RS08175 flgB 1616123..1616512 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  AADV39_RS08180 flgC 1616512..1616964 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  AADV39_RS08185 fliE 1616975..1617295 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  AADV39_RS08190 fliF 1617338..1618948 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  AADV39_RS08195 fliG 1618961..1619977 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  AADV39_RS08200 fliH 1619970..1620725 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=976119 AADV39_RS08170 WP_003154263.1 1614990..1615769(+) (codY) [Bacillus velezensis strain M4019]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=976119 AADV39_RS08170 WP_003154263.1 1614990..1615769(+) (codY) [Bacillus velezensis strain M4019]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment