Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   UXQ32_RS02505 Genome accession   NZ_CP151255
Coordinates   530295..530864 (+) Length   189 a.a.
NCBI ID   WP_045176736.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN168     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 525295..535864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXQ32_RS02480 (UXQ32_02480) cysE 526508..527155 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  UXQ32_RS02485 (UXQ32_02485) cysS 527139..528539 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  UXQ32_RS02490 (UXQ32_02490) - 528532..528936 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  UXQ32_RS02495 (UXQ32_02495) rlmB 528944..529690 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  UXQ32_RS02500 (UXQ32_02500) - 529690..530214 (+) 525 WP_000664738.1 NYN domain-containing protein -
  UXQ32_RS02505 (UXQ32_02505) sigH 530295..530864 (+) 570 WP_045176736.1 sigma-70 family RNA polymerase sigma factor Regulator
  UXQ32_RS02510 (UXQ32_02510) rpmG 530979..531122 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  UXQ32_RS02515 (UXQ32_02515) secE 531178..531360 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  UXQ32_RS02520 (UXQ32_02520) nusG 531373..531921 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  UXQ32_RS02525 (UXQ32_02525) rplK 532102..532524 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  UXQ32_RS02530 (UXQ32_02530) rplA 532732..533424 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  UXQ32_RS02535 (UXQ32_02535) rplJ 533696..534196 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  UXQ32_RS02540 (UXQ32_02540) rplL 534239..534607 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  UXQ32_RS02545 (UXQ32_02545) - 534782..535390 (+) 609 WP_023913388.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23113.96 Da        Isoelectric Point: 9.5790

>NTDB_id=975944 UXQ32_RS02505 WP_045176736.1 530295..530864(+) (sigH) [Staphylococcus aureus strain BSN168]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQYKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=975944 UXQ32_RS02505 WP_045176736.1 530295..530864(+) (sigH) [Staphylococcus aureus strain BSN168]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTATAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment