Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   AADG10_RS01865 Genome accession   NZ_CP151158
Coordinates   397680..398510 (-) Length   276 a.a.
NCBI ID   WP_003709392.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain TCI153     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 392680..403510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG10_RS01845 (AADG10_01840) - 393811..394767 (+) 957 WP_014568802.1 DhaKLM operon coactivator DhaQ -
  AADG10_RS01850 (AADG10_01845) dhaS 394768..395292 (-) 525 WP_014568803.1 dihydroxyacetone kinase transcriptional activator DhaS -
  AADG10_RS01855 (AADG10_01850) brnQ 395438..396820 (-) 1383 WP_014568804.1 branched-chain amino acid transport system II carrier protein -
  AADG10_RS01860 (AADG10_01855) - 397359..397625 (+) 267 WP_003701014.1 hypothetical protein -
  AADG10_RS01865 (AADG10_01860) endA 397680..398510 (-) 831 WP_003709392.1 DNA/RNA non-specific endonuclease Machinery gene
  AADG10_RS01870 (AADG10_01865) - 398879..399481 (+) 603 WP_003701011.1 nitroreductase family protein -
  AADG10_RS01875 (AADG10_01870) - 399534..401465 (-) 1932 WP_081537151.1 heavy metal translocating P-type ATPase -
  AADG10_RS01880 (AADG10_01875) - 401615..401929 (+) 315 WP_003704272.1 ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 276 a.a.        Molecular weight: 30410.73 Da        Isoelectric Point: 10.4970

>NTDB_id=975513 AADG10_RS01865 WP_003709392.1 397680..398510(-) (endA) [Ligilactobacillus salivarius strain TCI153]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide


Download         Length: 831 bp        

>NTDB_id=975513 AADG10_RS01865 WP_003709392.1 397680..398510(-) (endA) [Ligilactobacillus salivarius strain TCI153]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAGTTTATGAGATGGTTAGCTACCGTAGCAGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAAGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCGTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGACGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACTTACCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCCCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAGTCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

60.538

80.797

0.489
  endA Streptococcus pneumoniae D39

60.538

80.797

0.489
  endA Streptococcus pneumoniae R6

60.538

80.797

0.489
  endA Streptococcus pneumoniae TIGR4

60.538

80.797

0.489

Multiple sequence alignment