Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACK2OW_RS13265 Genome accession   NZ_CP180575
Coordinates   2475464..2476381 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain K3C     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2470464..2481381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2OW_RS13250 (ACK2OW_13250) trpS 2471044..2472036 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  ACK2OW_RS13255 (ACK2OW_13255) oppA 2472780..2474417 (+) 1638 WP_350415939.1 oligopeptide ABC transporter substrate-binding protein OppA -
  ACK2OW_RS13260 (ACK2OW_13260) oppB 2474525..2475460 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  ACK2OW_RS13265 (ACK2OW_13265) amiD 2475464..2476381 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  ACK2OW_RS13270 (ACK2OW_13270) oppD 2476386..2477462 (+) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  ACK2OW_RS13275 (ACK2OW_13275) oppF 2477464..2478381 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  ACK2OW_RS13280 (ACK2OW_13280) yjbB 2478488..2479705 (+) 1218 WP_072175656.1 MFS transporter -
  ACK2OW_RS13285 (ACK2OW_13285) yjbC 2479869..2480447 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  ACK2OW_RS13290 (ACK2OW_13290) spx 2480628..2481023 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=975029 ACK2OW_RS13265 WP_003232954.1 2475464..2476381(+) (amiD) [Bacillus subtilis strain K3C]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=975029 ACK2OW_RS13265 WP_003232954.1 2475464..2476381(+) (amiD) [Bacillus subtilis strain K3C]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment