Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AABL52_RS05490 Genome accession   NZ_CP151108
Coordinates   1057761..1060097 (+) Length   778 a.a.
NCBI ID   WP_097844005.1    Uniprot ID   -
Organism   Bacillus paramobilis strain IMGN7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1052761..1065097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS05470 (AABL52_05470) - 1054163..1054579 (+) 417 WP_000704116.1 Rrf2 family transcriptional regulator -
  AABL52_RS05475 (AABL52_05475) - 1054615..1055760 (+) 1146 WP_098258453.1 cysteine desulfurase family protein -
  AABL52_RS05480 (AABL52_05480) mnmA 1055777..1056892 (+) 1116 WP_341519023.1 tRNA 2-thiouridine(34) synthase MnmA -
  AABL52_RS05485 (AABL52_05485) - 1057003..1057662 (+) 660 WP_097844006.1 tetratricopeptide repeat protein -
  AABL52_RS05490 (AABL52_05490) recD2 1057761..1060097 (+) 2337 WP_097844005.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AABL52_RS05495 (AABL52_05495) - 1060225..1060413 (+) 189 WP_000469281.1 hypothetical protein -
  AABL52_RS05500 (AABL52_05500) - 1060432..1060560 (+) 129 WP_001053553.1 YrzQ family protein -
  AABL52_RS05505 (AABL52_05505) - 1060596..1060808 (-) 213 WP_000242555.1 hypothetical protein -
  AABL52_RS05510 (AABL52_05510) - 1060984..1062051 (+) 1068 WP_341519024.1 AI-2E family transporter -
  AABL52_RS05515 (AABL52_05515) - 1062090..1062434 (-) 345 WP_097844002.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87277.69 Da        Isoelectric Point: 5.1939

>NTDB_id=974872 AABL52_RS05490 WP_097844005.1 1057761..1060097(+) (recD2) [Bacillus paramobilis strain IMGN7]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGQIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
DNAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=974872 AABL52_RS05490 WP_097844005.1 1057761..1060097(+) (recD2) [Bacillus paramobilis strain IMGN7]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTACCGCAAACAAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTCGGGGAACATGCCATTTCTAAAATTATGGATG
ATCCTGATGCGTTAAATGGTGTTGTTAACAAACAAAAAGCTCAGGAAATATATGAGACGATTGTTGAACATCAAGGGCTA
GAGAAAGTAATGAGCTTTTTAAATGGCTATGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAACAATATAAAGAGAT
GACATTAGAAGTGATCCGTAATAATCCATATCAGCTTATTGAAGAAGTGGATGGAATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGGATATCAGGTAATCATGATGATCGTGTACGTGCGGGATGTTTTTATACGTTAGAAAATGTATCA
TTACAACTTGGTCACGTTTATATGGGGAAAGATCAACTCGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACAGAGGAAGATATTGTAGGTTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTGT
ATTTAGCTTCGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATCCGCAGGCTCATGAATCAAGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGACAAATTGAAGAACAACTGAATGTGCAGTATGCACCATTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GCATTGTTGAAATGTATGCATCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGAGCGGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAATATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGTCCTGGGCAAGTGTTGAAAGACTTATTGAATGCAGGTGCAGTTCCGACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTCGCCCATGCGATAAAAAATGGAACGCTCCCGCCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GACAACGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCGCCGATGTACCGTGGGCCTGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTATTGCAGCTCGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACGTATAC
AAAGCCAGACTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAGTCGCAAGGTAGTGAGTTCCCGATTGTGA
TTATGCCGATAGTAAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
GAGTCGCTTGCAAGAATCACAAGGAGAAGTACAAATGGTAACAGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578

Multiple sequence alignment