Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AABL52_RS05420 Genome accession   NZ_CP151108
Coordinates   1040887..1043226 (+) Length   779 a.a.
NCBI ID   WP_341519021.1    Uniprot ID   -
Organism   Bacillus paramobilis strain IMGN7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1035887..1048226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS05405 (AABL52_05405) - 1036919..1037203 (+) 285 WP_000890213.1 post-transcriptional regulator -
  AABL52_RS05410 (AABL52_05410) secDF 1037474..1039738 (+) 2265 WP_063260738.1 protein translocase subunit SecDF -
  AABL52_RS05415 (AABL52_05415) - 1039892..1040785 (+) 894 WP_073516592.1 cation diffusion facilitator family transporter -
  AABL52_RS05420 (AABL52_05420) recJ 1040887..1043226 (+) 2340 WP_341519021.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AABL52_RS05425 (AABL52_05425) - 1043274..1043786 (+) 513 WP_000346221.1 adenine phosphoribosyltransferase -
  AABL52_RS05430 (AABL52_05430) relA 1043998..1046181 (+) 2184 WP_001262800.1 GTP diphosphokinase -
  AABL52_RS05435 (AABL52_05435) - 1046199..1046639 (+) 441 WP_097844010.1 D-tyrosyl-tRNA(Tyr) deacylase -
  AABL52_RS05440 (AABL52_05440) - 1046854..1047030 (+) 177 WP_001242605.1 hypothetical protein -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 88033.60 Da        Isoelectric Point: 4.9271

>NTDB_id=974871 AABL52_RS05420 WP_341519021.1 1040887..1043226(+) (recJ) [Bacillus paramobilis strain IMGN7]
MLQPKTRWKEKEYNGERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GVDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENNFPPEDNKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEHAEVILTEEDFIPITAVDVFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANVAELPKEKITMVYFSEEVLNKFSLEDYKEHMMHASEVTQLDDQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKAPFSLRQYGAQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=974871 AABL52_RS05420 WP_341519021.1 1040887..1043226(+) (recJ) [Bacillus paramobilis strain IMGN7]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGGTGAACGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTTGGTAGAGGACTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACGACTGTGTTATATCTTGCCTTGCAAGAATT
AGGGGCAGACGTAGAATTTTATATCCCAAACCGTTTTACAGAAGGATATGGACCAAACGAAGAAGCATTTCGTTGGGCAC
ATAGCGCAGGGTTCTCGCTAATTATTACTGTTGATACTGGTATCGCAGCAGTTCATGAAGCGAAGGTAGCGAAGGAGCTT
GGAGTAGATCTGATTATTACGGATCACCATGAGCCACCGCCGGAATTGCCAGAAGCACTTGCGATTATTCATCCGAAATT
AGATGGCGGTGTGTATCCGTTCCACTATTTAGCTGGTGTAGGTGTTGCGTTTAAAGTTGCGCATGCACTATTAGGCCGTG
TACCGGAACATTTATTAGAAATTGCAGTAATTGGTACAGTAGCCGATTTAGTGTCACTTCATGGTGAGAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGCATGACAAAAAATATCGGACTAAAGGCGCTGTTTAAAGTTGCTAACGTATCGCA
AAGTGAAATTACAGAAGAGAGCATTGGCTTCTCGATCGCACCGCGTATTAATGCAGTTGGGCGTTTAGAAGATGCTACGC
CGGCTGTACATCTTTTATTATCAGATGATCCGGAAGAAGCGAAAGAGTTGGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATCGCTGAAGTGGAAAATAATTTCCCGCCAGAAGACAATAAAGT
ACTAGTACTGGCAAAAGAAGGCTGGAATCCAGGTGTAATTGGAATCGTCGCATCTAAATTAGTTGAACGTTTTTATCGTC
CAACGATTGTATTATGCATTGATCCTGTAAAAGAAACAGCAAAAGGTTCAGCACGTAGTATTGCAGGATTTGATTTATTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGACATCCAATGGCAGCGGGAATGACGCTACATATGAA
TGATGTAGATGAATTGCGCCGCCGCTTAAATGAACATGCAGAGGTAATTTTAACAGAAGAAGATTTTATTCCAATTACAG
CTGTTGATGTTTTTTGTAAAGTGGAAGATGTAACGCTTGCAGCAATTGAAGATATGCAAAAGTTAGCGCCATTTGGTGTT
GGAAATCCAAAACCGCGTATTGCAGTGAAGGACGCAGAGCTAGAAAGTATTCGTGCAATCGGATCAGATGGTTCTCATTT
GAAAATGGCTCTTCGCGATGGACAAGCGACACTGGATACAATCGGATTTGGTTTTGGTGCGTATGCGAAAGAAATTTCTC
CAGTTGCAAAGGTATCTGTAATAGGAGAAGCATCTATCAATGAATGGAATAATTTTAAGAAGCCGCAATTAATGGTACAA
GATATTGCTGTAGAAGCGTGGCAATTATTTGATTGGCGTAGTATGCGTAACGTAGAAGCGAATGTAGCAGAACTTCCGAA
AGAAAAAATTACGATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAAGACTATAAAGAGCATATGATGC
ATGCATCAGAAGTAACCCAATTGGATGATCAATACATCGTGTTACTTGATTTACCAAAAGGAACAGATGAATTACGAGAT
TTATTTAAAGTTGGGTTCCCATCGCGAATTTATACGCTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGAGAACACTTTAAATGGTACTATTCGTTCTTGAGCCAAAAAGCACCATTTTCTTTAAGACAATACGGAGCACAACTTT
GTCAACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.972

99.358

0.526

Multiple sequence alignment