Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ACMX8W_RS12615 Genome accession   NZ_CP180439
Coordinates   2423339..2424829 (-) Length   496 a.a.
NCBI ID   WP_047182818.1    Uniprot ID   -
Organism   Bacillus subtilis strain Z-294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2418339..2429829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMX8W_RS12585 (ACMX8W_12585) gudB 2418481..2419755 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  ACMX8W_RS12590 (ACMX8W_12590) mecB 2419911..2420495 (-) 585 WP_003230533.1 genetic competence negative regulator -
  ACMX8W_RS12595 (ACMX8W_12595) ypbG 2420654..2421433 (-) 780 WP_047182815.1 metallophosphoesterase -
  ACMX8W_RS12600 (ACMX8W_12600) ypbF 2421519..2421962 (-) 444 WP_003230531.1 YpbF family protein -
  ACMX8W_RS12605 (ACMX8W_12605) claE 2422025..2422759 (-) 735 WP_047182816.1 LysM peptidoglycan-binding domain-containing protein -
  ACMX8W_RS12610 (ACMX8W_12610) ypbD 2422710..2423312 (-) 603 WP_047182817.1 CPBP family intramembrane glutamic endopeptidase -
  ACMX8W_RS12615 (ACMX8W_12615) recS 2423339..2424829 (-) 1491 WP_047182818.1 ATP-dependent DNA helicase RecQ Machinery gene
  ACMX8W_RS12620 (ACMX8W_12620) gmmB 2424822..2425880 (-) 1059 WP_015483390.1 helix-turn-helix domain-containing protein -
  ACMX8W_RS12625 (ACMX8W_12625) fdxA 2426146..2426394 (+) 249 WP_003225461.1 ferredoxin -
  ACMX8W_RS12630 (ACMX8W_12630) fmnP 2426434..2427006 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  ACMX8W_RS12635 (ACMX8W_12635) serA 2427503..2429080 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56499.01 Da        Isoelectric Point: 6.4518

>NTDB_id=974871 ACMX8W_RS12615 WP_047182818.1 2423339..2424829(-) (recS) [Bacillus subtilis strain Z-294]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLSCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=974871 ACMX8W_RS12615 WP_047182818.1 2423339..2424829(-) (recS) [Bacillus subtilis strain Z-294]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCGCTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTAAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGATGGAAAGCCTAGTGTCAGCATTTTGCTACGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAATTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTACTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCTCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment