Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   WKK05_RS33870 Genome accession   NZ_CP151099
Coordinates   7815142..7816251 (-) Length   369 a.a.
NCBI ID   WP_341527348.1    Uniprot ID   -
Organism   Nostoc sp. UHCC 0302     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7810142..7821251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKK05_RS33855 (WKK05_33390) - 7810664..7813126 (-) 2463 WP_341527345.1 AMIN domain-containing protein -
  WKK05_RS33860 (WKK05_33395) - 7813606..7814373 (-) 768 WP_341527346.1 pilus assembly protein PilO -
  WKK05_RS33865 (WKK05_33400) - 7814370..7815137 (-) 768 WP_341527347.1 PilN domain-containing protein -
  WKK05_RS33870 (WKK05_33405) pilM 7815142..7816251 (-) 1110 WP_341527348.1 type IV pilus biogenesis protein PilM Machinery gene
  WKK05_RS33875 (WKK05_33410) - 7816396..7817694 (+) 1299 WP_341527349.1 sugar ABC transporter substrate-binding protein -
  WKK05_RS33880 (WKK05_33415) - 7817739..7819070 (-) 1332 WP_341527350.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  WKK05_RS33885 (WKK05_33420) - 7819217..7819342 (-) 126 WP_341527351.1 photosystem II protein Y -
  WKK05_RS33890 (WKK05_33425) - 7819603..7820124 (-) 522 WP_341527352.1 gamma carbonic anhydrase family protein -
  WKK05_RS33895 (WKK05_33430) - 7820364..7820876 (+) 513 WP_341527353.1 TIGR02652 family protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40460.48 Da        Isoelectric Point: 4.5259

>NTDB_id=974857 WKK05_RS33870 WP_341527348.1 7815142..7816251(-) (pilM) [Nostoc sp. UHCC 0302]
MVKSFNSLFGKSNKGVGIELAPERVNLVQLRKQRQGLKIEAFTSVAVPEGVVTDGQITDPPAMAELIQQALAQSKIKTSR
VATALPGRDSIVRLIPVPAELDDKELREMVLNHEAGLYLPYPREEADVDYQKLGYFVDEDGIEKVQVLLVATRKEVTDTY
ISTFEQAGLQIDVLEINSFALIRTIRDRHLRELGPQEAAVLVDIEFDSTEIAIIVNGVPQFSRTVPIGTYQLQTSLARAM
SLPTSRDMEMLHGMVIPPTPVDGGKTGVTGINPGMAAIMRVLGELTDELRRSIDFYLNQSENLEVAQILLAGPGGGLQQL
DEFFSQRLSLPTTQIDPIGALSLEVDSEKFPQVQRSGLAIVLGLGMREV

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=974857 WKK05_RS33870 WP_341527348.1 7815142..7816251(-) (pilM) [Nostoc sp. UHCC 0302]
GTGGTTAAAAGCTTCAATAGTCTGTTTGGCAAATCTAATAAAGGGGTCGGCATTGAACTTGCGCCAGAAAGGGTGAATTT
AGTTCAGCTACGCAAGCAGCGACAAGGCTTAAAAATAGAAGCCTTCACATCAGTAGCAGTTCCAGAAGGTGTAGTTACTG
ATGGTCAAATTACCGATCCGCCAGCAATGGCGGAGTTAATCCAGCAGGCGCTAGCCCAAAGTAAAATCAAAACTTCTCGC
GTTGCTACTGCTCTACCAGGGCGGGATTCTATCGTTCGTTTGATACCTGTGCCAGCAGAGTTAGATGACAAAGAACTGCG
AGAGATGGTGCTAAACCATGAAGCAGGTTTGTATTTACCCTATCCCCGCGAAGAAGCTGATGTAGATTATCAGAAACTTG
GGTACTTCGTAGATGAGGATGGCATTGAAAAAGTACAAGTACTCTTAGTTGCCACCCGCAAGGAGGTGACGGATACATAT
ATAAGTACATTCGAGCAGGCAGGATTGCAAATTGATGTTTTAGAAATTAACAGTTTTGCTCTGATTCGGACTATTCGCGA
TCGCCATTTGCGAGAATTAGGGCCGCAAGAAGCAGCAGTGCTAGTTGATATAGAGTTTGACAGCACAGAAATAGCCATCA
TTGTTAACGGAGTTCCACAATTTTCGCGTACCGTGCCTATTGGTACGTATCAATTGCAAACGTCCTTAGCAAGGGCAATG
AGTTTACCCACGTCACGAGATATGGAAATGTTGCACGGAATGGTTATTCCCCCAACTCCCGTAGACGGTGGAAAAACAGG
GGTTACAGGAATCAATCCTGGTATGGCAGCAATTATGAGAGTGTTGGGAGAATTGACAGATGAGCTACGCCGTTCTATCG
ATTTTTATCTCAATCAAAGTGAAAATTTGGAAGTAGCGCAGATTCTACTTGCTGGGCCAGGAGGCGGACTTCAACAGCTA
GATGAGTTCTTTAGCCAGCGACTGAGCTTACCAACCACCCAAATAGATCCTATTGGAGCTTTGTCTTTAGAAGTTGACAG
CGAAAAATTTCCACAAGTGCAACGCTCTGGTTTAGCGATCGTACTCGGTCTAGGAATGCGGGAGGTGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-240)

Type IV pilus assembly protein PilM; (PilM_2)

(284-368)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

66.033

99.729

0.659

Multiple sequence alignment