Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB4Y54_RS10025 Genome accession   NZ_AP031325
Coordinates   1843100..1844365 (+) Length   421 a.a.
NCBI ID   WP_244344540.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838100..1849365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y54_RS09995 (TthTF21_19730) - 1838293..1839477 (+) 1185 WP_353300324.1 ABC transporter substrate-binding protein -
  AB4Y54_RS10000 (TthTF21_19740) folE 1839490..1840109 (-) 620 Protein_1949 GTP cyclohydrolase I FolE -
  AB4Y54_RS10005 (TthTF21_19750) - 1840148..1840840 (-) 693 WP_353300325.1 gamma carbonic anhydrase family protein -
  AB4Y54_RS10010 (TthTF21_19760) - 1840821..1841201 (-) 381 WP_011228981.1 NUDIX hydrolase -
  AB4Y54_RS10015 (TthTF21_19770) - 1841192..1842055 (-) 864 WP_353300326.1 DUF1028 domain-containing protein -
  AB4Y54_RS10020 (TthTF21_19780) - 1842392..1843069 (-) 678 WP_353386145.1 hypothetical protein -
  AB4Y54_RS10025 (TthTF21_19790) rarA 1843100..1844365 (+) 1266 WP_244344540.1 replication-associated recombination protein A Machinery gene
  AB4Y54_RS10030 (TthTF21_19800) - 1844316..1844885 (-) 570 WP_353300327.1 hypothetical protein -
  AB4Y54_RS10035 (TthTF21_19810) - 1844912..1845628 (-) 717 WP_353300942.1 carbohydrate ABC transporter permease -
  AB4Y54_RS10040 (TthTF21_19820) - 1845759..1847060 (-) 1302 WP_353300328.1 ammonia-forming cytochrome c nitrite reductase subunit c552 -
  AB4Y54_RS10045 (TthTF21_19830) nrfH 1847071..1847433 (-) 363 WP_353406101.1 cytochrome c nitrite reductase small subunit -
  AB4Y54_RS10050 (TthTF21_19840) - 1847634..1848812 (+) 1179 Protein_1959 CaiB/BaiF CoA transferase family protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45994.74 Da        Isoelectric Point: 7.6004

>NTDB_id=97457 AB4Y54_RS10025 WP_244344540.1 1843100..1844365(+) (rarA) [Thermus thermophilus strain TF21]
MGEVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLGSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=97457 AB4Y54_RS10025 WP_244344540.1 1843100..1844365(+) (rarA) [Thermus thermophilus strain TF21]
ATGGGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
TCCCAAGGGGCTTCTGAGGCGGATGCTGGAGGCGGGGCGGCTCTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAGGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCGGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCAAAGGGGGGTCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAAGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACCCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTAGGGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCCGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCTGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTCAAGGCGCTTCGGGAGCGGTTCCAAACCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)

AAA C-terminal domain (AAA_assoc_2)

(176-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.48

100

0.385

Multiple sequence alignment