Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AABD46_RS14665 Genome accession   NZ_CP150947
Coordinates   3175639..3176364 (+) Length   241 a.a.
NCBI ID   WP_069485175.1    Uniprot ID   A0AAW8Q361
Organism   Vibrio parahaemolyticus strain vp-HL-202212     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3170639..3181364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABD46_RS14650 (AABD46_14650) - 3171742..3174063 (+) 2322 WP_159404211.1 Tex family protein -
  AABD46_RS14655 (AABD46_14655) - 3174199..3174663 (-) 465 WP_005459035.1 hypothetical protein -
  AABD46_RS14660 (AABD46_14660) bioH 3174787..3175554 (-) 768 WP_193237427.1 pimeloyl-ACP methyl ester esterase BioH -
  AABD46_RS14665 (AABD46_14665) comF 3175639..3176364 (+) 726 WP_069485175.1 phosphoribosyltransferase family protein Machinery gene
  AABD46_RS14670 (AABD46_14670) nfuA 3176462..3177046 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  AABD46_RS14675 (AABD46_14675) nudE 3177267..3177836 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  AABD46_RS14680 (AABD46_14680) cysQ 3177877..3178704 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AABD46_RS14685 (AABD46_14685) - 3178989..3179750 (-) 762 WP_005496730.1 type II secretion system protein N -
  AABD46_RS14690 (AABD46_14690) - 3179752..3180243 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27620.77 Da        Isoelectric Point: 9.1620

>NTDB_id=974198 AABD46_RS14665 WP_069485175.1 3175639..3176364(+) (comF) [Vibrio parahaemolyticus strain vp-HL-202212]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCGHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=974198 AABD46_RS14665 WP_069485175.1 3175639..3176364(+) (comF) [Vibrio parahaemolyticus strain vp-HL-202212]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGTTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGGTCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATATTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGTACAAGAAATCCAGTCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment